Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq7268 107 2e-18 seq4730 107 2e-18 >seq7268 Length=409911 Score = 107 bits (118), Expect = 2e-18 Identities = 165/233 (71%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | |||||| || | || | | |||||||||||||| |||||||| Sbjct 283479 GCCTCCACGTAGACGCAATACAAGGTGCAATGTAGACTCCTTTTGAATATTGTAGTCAGA 283420 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | ||||| || ||||| ||||| || | |||| | | ||||||||| || || Sbjct 283419 AAGTGTACGGCCATCTTCGAGCTGTTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGGGG 283360 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||||||||| ||| |||| | ||| | | ||| | || |||| | ||| | Sbjct 283359 AATACCTTCTTTGTC-TTGAATTTTAGCTTTGACATTTTCTATAGTATCGGATGCCTCAA 283301 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 | || | ||| | |||||||| || || || || |||||||| |||||| || Sbjct 283300 CTTCCAGCGTTATTGTTTTACCTGTAAGGGTCTTAACAAAAATTTGCATGCCT 283248 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | |||||| || | || | | |||||||||||||| |||||||| Sbjct 282567 GCCACCACGAAGACGCAATACAAGGTGCAATGTAGACTCCTTTTGAATATTGTAGTCAGA 282508 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || || ||||| |||||||||| | |||| | | ||| || || || || Sbjct 282507 AAGTGTGCGGCCATCTTCGAGCTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGTGG 282448 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||||||||| ||| |||| | || | | || | ||||||| | ||| | Sbjct 282447 AATACCTTCTTTGTC-TTGAATTTTCGCCTTCACGTTCTCAATTGTGTCGGAGGCCTCGA 282389 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | ||||| ||||| || || || || ||||| ||||| Sbjct 282388 CCTCCAGAGTTATTGTTTTTCCAGTAAGGGTCTTGACGAAAATTTGCAT 282340 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | |||||| || | || | |||||||||||||||| |||||||| Sbjct 283251 GCCTCCACGAAGACGCAATACAAGGTGCAATGTTGACTCCTTTTGAATATTGTAGTCAGA 283192 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || || ||||| ||||| || | |||| | | ||| || || || || Sbjct 283191 AAGTGTGCGGCCATCTTCGAGCTGTTTGCCCGCGAAGATCAACCTCTGCTGATCTGGTGG 283132 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAA-TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||||||||| ||| |||||| |||| | ||| | ||||| | || || | Sbjct 283131 AATACCTTCTTTGTC-TTGAATTTTTGCCTTAACATTTTCAATTGTGTCTGACGCTTCAA 283073 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATGGCT 138618 |||| | || | ||||| || || || || || || ||||| |||||| || Sbjct 283072 CCTCCAGAGTTATTGTTTTTCCTGTAAGGGTCTTAACGAAAATTTGCATGCCT 283020 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 || ||||||||||| || ||||| | || || || || || |||||||| | Sbjct 282761 GATTCCTTTTGAATATTATAGTCAGAAAGTGTGCGGCCATCTTCAAGCTGTTTACCAGCG 282702 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| | | ||| |||||||| || |||||||||||||| ||| |||| | ||| | Sbjct 282701 AAGATCAACCTCTGCTGGTCCGGGGGAATACCTTCTTTGTC-TTGAATTTTAGCTTTGAC 282643 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | || |||| | ||| || || | ||| | |||||||| || || || || Sbjct 282642 ATTTTCAATAGTATCGGATGCCTCAACTTCCAGCGTTATTGTTTTACCTGTAAGGGTCTT 282583 Query 138600 TACAAAAATCTGCATG 138615 |||||||| |||||| Sbjct 282582 AACAAAAATTTGCATG 282567 Score = 89.7 bits (98), Expect = 5e-13 Identities = 139/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| ||||| || ||||| | || || || || || |||||||| | Sbjct 284357 GACTCCTTCTGAATATTATAGTCAGAAAGTGTGCGGCCATCTTCAAGCTGTTTACCAGCG 284298 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAA 138539 |||| | | ||| |||||||| || |||||||||||||| ||| |||| | ||| | Sbjct 284297 AAGATCAACCTCTGCTGGTCCGGGGGAATACCTTCTTTGTC-TTGAATTTTAGCTTTGAC 284239 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | || |||| | ||| || || | ||| | |||||||| || ||||| || Sbjct 284238 ATTTTCAATAGTATCGGATGCCTCAACTTCCAGCGTTATTGTTTTACCTGTAAGAGTCTT 284179 Query 138600 TACAAAAATCTGCATG 138615 || ||||| |||||| Sbjct 284178 AACGAAAATTTGCATG 284163 Score = 84.2 bits (92), Expect = 2e-11 Identities = 137/195 (70%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||||||||| |||||||| | || || || || || ||||| |||| Sbjct 282305 GACTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGTCCATCTTCAAGCTGTTTTCCGGCG 282246 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAA- 138539 |||| | | ||| || || || || |||||||||||||| ||| |||||| |||| Sbjct 282245 AAGATCAACCTCTGCTGATCTGGTGGAATACCTTCTTTGTC-TTGAATTTTTGCCTTAAC 282187 Query 138540 TTGTTCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | ||| | ||||| | | || ||||| | || | ||||| ||||||| || || Sbjct 282186 ATTTTCAATTGTGTCTGATGCTTCAACCTCTAAGGTTATTGTTTTTCCAGTCAATGTCTT 282127 Query 138600 TACAAAAATCTGCAT 138614 || || |||||||| Sbjct 282126 AACGAAGATCTGCAT 282112 Score = 82.4 bits (90), Expect = 8e-11 Identities = 161/233 (69%), Gaps = 10/233 (4%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| ||||| | ||| | || | ||| | | || ||||||||||| |||||||| | Sbjct 284847 GCCACCTCGAAGACGGAGTACAAGATGGAGAGTGGATTCCTTTTGAATATTGTAGTC--T 284790 Query 138447 CATAGTACGCGAGTCC----TCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCG 138502 | || || | |||| || || |||||||||| | |||| | | ||| || || | Sbjct 284789 GAAAG--CGTGCGTCCATCTTCAAGCTGTTTACCGGCAAAGATCAACCTCTGCTGATCTG 284732 Query 138503 GAGGTATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGAC 138561 | || |||||||||||||| ||| |||| | || | | || | ||||||| | | Sbjct 284731 GTGGAATACCTTCTTTGTC-TTGAATTTTCGCCTTCACGTTCTCAATTGTGTCGGAGGCC 284673 Query 138562 TCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || ||||| | || | ||||| || || || || || || ||||| ||||| Sbjct 284672 TCGACCTCCAGAGTTATTGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCAT 284620 Score = 82.4 bits (90), Expect = 8e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||||| || | ||| | | | || || |||||||| |||||||| Sbjct 286899 GCCTCCACGGAGTCGCAATACAAGATGGAGGGTGGATTCTTTTTGAATATTGTAGTCAGA 286840 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 | || || || ||||| |||||||||| |||| | | ||| || || || || Sbjct 286839 AAGTGTGCGGCCATCTTCGAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGG 286780 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTG-TTTTAATTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||||||||| ||| |||| | || | | || | || |||| | || | Sbjct 286779 AATACCTTCTTTGTC-TTGAATTTTAGCCTTGACATTCTCAATAGTATCGGAGGCTTCAA 286721 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 | || | ||| | ||||| || || || || ||||||||||| ||||| Sbjct 286720 CTTCCAGCGTTATTGTTTTCCCCGTGAGGGTCTTTACAAAAATTTGCAT 286672 >seq4730 Length=3448589 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||||||||| || || | | | || ||||| || ||||||||||| Sbjct 2521254 CCTCCGCGAAGACGCAAAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGAT 2521313 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || ||| || | |||||||| | | |||||| ||| ||||| || |||||| Sbjct 2521314 AGAGTTCGTCCGTCTTCTAACTGTTTACCAGCAAAGATTAAACGTTGTTGTTCGGGAGGT 2521373 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCACC 138567 || ||||| || || || || ||| | | ||| | ||||| | | ||| || Sbjct 2521374 ATTCCTTCCTTATCTTGTATCTTAGCTTTCACGTTTTCTATCGTGTCCGAAGCCTCAACT 2521433 Query 138568 TCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 || | || | |||||||| || || ||||||||||| |||||||| Sbjct 2521434 TCCAGGGTGATGGTTTTACCCGTGAGTGTTTTTACAAAGATCTGCAT 2521480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496184244875280