Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq7268 136 4e-27 seq4730 86.0 7e-12 >seq7268 Length=409911 Score = 136 bits (150), Expect = 4e-27 Identities = 159/215 (74%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438 ||||| || |||||||||||| ||||||||| ||||| || || || |||||||| | Sbjct 286202 CGCAATACAAGATGCAATGTAGACTCCTTTTGAATATTATAATCTGAAAGAGTGCGGCCA 286143 Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498 || || ||||| || |||||||| ||||| ||||||||||| | || | ||||| || Sbjct 286142 TCTTCAAGCTGTTTACCGGCGAAGATCAACCGCTGCTGGTCTGGTGGGATTCTCTCTTTA 286083 Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558 ||| ||||||| ||| | || | | ||||| | || || |||| || || Sbjct 286082 TCCTGGATCTTCGCCTTCACATTCTCAATAGTGTCAGAGGCCTCTACTTCCAATGTAATA 286023 Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 ||||| || ||||| || ||||| || |||||||| Sbjct 286022 GTTTTACCAGTCAGAGTCTTAACGAAAATTTGCAT 285988 Score = 116 bits (128), Expect = 4e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | || |||||| || || ||||||||| ||||||||| ||||||||||| | Sbjct 283480 TGCCTCCACGTAGACGCAATACAAGGTGCAATGTAGACTCCTTTTGAATATTGTAGTCAG 283421 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || || || | || |||||||| ||||| ||||| ||||| | ||| ||||| | | Sbjct 283420 AAAGTGTACGGCCATCTTCGAGCTGTTTGCCTGCGAAGATCAACCTCTGTTGGTCTGGGG 283361 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | || ||||| || || |||| | | | || ||| | || | Sbjct 283360 GAATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCTATAGTATCGGATGCCTCAA 283301 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| ||| || ||||| || || || || |||||||| |||||||| Sbjct 283300 CTTCCAGCGTTATTGTTTTACCTGTAAGGGTCTTAACAAAAATTTGCAT 283252 Score = 111 bits (122), Expect = 2e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | |||||| || || |||||||| ||||||||| ||||||||||| | Sbjct 283252 TGCCTCCACGAAGACGCAATACAAGGTGCAATGTTGACTCCTTTTGAATATTGTAGTCAG 283193 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || |||||||| ||||| ||||| ||||| | |||||| || | | Sbjct 283192 AAAGTGTGCGGCCATCTTCGAGCTGTTTGCCCGCGAAGATCAACCTCTGCTGATCTGGTG 283133 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | || ||||| || || ||| | | | | ||||| || ||| | Sbjct 283132 GAATACCTTCTTTGTCTTGAATTTTTGCCTTAACATTTTCAATTGTGTCTGACGCTTCAA 283073 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| || || ||||| || || || || ||||| || |||||||| Sbjct 283072 CCTCCAGAGTTATTGTTTTTCCTGTAAGGGTCTTAACGAAAATTTGCAT 283024 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | |||||| || || ||||||||| ||||||||| ||||||||||| | Sbjct 282568 TGCCACCACGAAGACGCAATACAAGGTGCAATGTAGACTCCTTTTGAATATTGTAGTCAG 282509 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || |||||||| || ||||| || ||||| | |||||| || | | Sbjct 282508 AAAGTGTGCGGCCATCTTCGAGCTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGTG 282449 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | || ||||| || ||| ||| | || | | |||||| | || | Sbjct 282448 GAATACCTTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCAATTGTGTCGGAGGCCTCGA 282389 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| || || ||||| || || || || || || || |||||||| Sbjct 282388 CCTCCAGAGTTATTGTTTTTCCAGTAAGGGTCTTGACGAAAATTTGCAT 282340 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||| | || ||||||| |||| ||||| || ||||||||||||| Sbjct 283708 TGCCTCCGCGAAGACGTAGTACAAGATGCAGTGTAGATTCCTTCTGAATATTGTAGTCGG 283649 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||| | | || || |||||||| |||||||| ||||| | ||| || || | | Sbjct 283648 AAAGTGTGTGGCCATCTTCAAGCTGCTTCCCGGCGAAGATCAATCTCTGTTGTTCTGGTG 283589 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | ||| || ||| || || ||||| || | | || || | || | Sbjct 283588 GGATTCCCTCTTTATCCTGAATTTTTGACTTGACGTTCTCAATTGTATCAGAGGCCTCTA 283529 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| ||| |||||||| || || || || |||||||| |||||||| Sbjct 283528 CTTCCAACGTTATGGTTTTTCCGGTAAGGGTCTTAACAAAAATTTGCAT 283480 Score = 107 bits (118), Expect = 2e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| |||| ||||||||| ||||||||||| || || ||||| | || || Sbjct 285740 ACAAGATGCAGTGTAGACTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGGCCATCTTCA 285681 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||| || || ||||| ||||| | ||||||||| | || | | ||| || ||| Sbjct 285680 AGCTGTTTACCAGCGAAGATCAACCTCTGCTGGTCTGGTGGTATTCCCTCTTTATCCTGA 285621 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 ||||| ||| | || | | ||||| | || || |||| || || ||||| Sbjct 285620 ATCTTTGCCTTCACATTCTCAATAGTGTCAGAGGCCTCTACTTCCAATGTAATAGTTTTA 285561 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 || ||||| || ||||| || |||||||| Sbjct 285560 CCAGTCAGGGTCTTAACGAAAATTTGCAT 285532 Score = 105 bits (116), Expect = 8e-18 Identities = 138/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 || ||||| ||||||||||| || || ||||| | || || |||||||| |||||||| Sbjct 283898 TCTTTTTGAATATTGTAGTCAGAAAGTGTGCGGCCATCTTCAAGCTGCTTACCGGCGAAG 283839 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | | ||| ||||| || ||| ||| | || Sbjct 283838 ATCAACCTCTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGAATTTTCGCCTTTACATTC 283779 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | |||||| | || || |||| || || ||||| || || || ||||||||| Sbjct 283778 TCAATTGTGTCGGAGGCCTCAACTTCCAATGTAATAGTTTTTCCAGTGAGGGTTTTAACA 283719 Query 46583 AAGATTTGCAT 46593 || |||||||| Sbjct 283718 AAAATTTGCAT 283708 Score = 102 bits (112), Expect = 9e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 ||||||| | | ||||| || ||||| | || || ||||| ||||||||||| | Sbjct 286900 TGCCTCCACGGAGTCGCAATACAAGATGGAGGGTGGATTCTTTTTGAATATTGTAGTCAG 286841 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || |||||||| || |||||||| ||||| | |||||| || | | Sbjct 286840 AAAGTGTGCGGCCATCTTCGAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGG 286781 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | || ||||| || || ||||| || | | || ||| | ||| | Sbjct 286780 GAATACCTTCTTTGTCTTGAATTTTAGCCTTGACATTCTCAATAGTATCGGAGGCTTCAA 286721 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| ||| || ||||| ||||| || || || ||||| |||||||| Sbjct 286720 CTTCCAGCGTTATTGTTTTCCCCGTGAGGGTCTTTACAAAAATTTGCAT 286672 Score = 93.3 bits (102), Expect = 5e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 ||||| || ||||||||||| || || ||||| | || || ||||| || |||||||| Sbjct 285038 TCCTTCTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTCAAGCTGTTTACCGGCGAAG 284979 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 ||||| | ||||||||| | || | | ||| ||||| || || ||| | || Sbjct 284978 ATCAACCTCTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGAATTTTTGCCTTTACATTC 284919 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | ||||| | || || |||| || || ||||| || || || ||||||||| Sbjct 284918 TCAATTGTGTCAGAGGCCTCTACTTCCAATGTAATAGTTTTTCCAGTAAGTGTTTTAACA 284859 Query 46583 AAGATTTGCAT 46593 || |||||||| Sbjct 284858 AAAATTTGCAT 284848 Score = 89.7 bits (98), Expect = 6e-13 Identities = 147/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 46385 ACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCG 46444 || ||||||| |||| ||||||||| ||||||||||| || || ||||| | || || Sbjct 282320 ACAAGATGCAGTGTAGACTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGTCCATCTTCA 282261 Query 46445 AGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 46504 ||||| || |||||||| ||||| | |||||| || | || | | || ||||| Sbjct 282260 AGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGA 282201 Query 46505 ATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTG 46564 || || ||| | | | | ||||| | ||| || || | || || ||||| Sbjct 282200 ATTTTTGCCTTAACATTTTCAATTGTGTCTGATGCTTCAACCTCTAAGGTTATTGTTTTT 282141 Query 46565 CCCGTCAGCGTTTTAACAAAGATTTGCATTTT 46596 || |||| || ||||| ||||| ||||| || Sbjct 282140 CCAGTCAATGTCTTAACGAAGATCTGCATATT 282109 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 46403 TCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAAT 46462 |||||||| ||||||||||| || || ||||| | || || ||||| ||||| || || Sbjct 284582 TCCTTTTGAATATTGTAGTCTGAAAGCGTGCGTCCATCTTCAAGCTGTTTGCCCGCAAAG 284523 Query 46463 ATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTC 46522 || || | |||||| || | || | || || ||||| ||| ||| ||| | || Sbjct 284522 ATTAATCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGGATTTTCGCCTTTACATTC 284463 Query 46523 GCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACA 46582 | | || ||| | || || |||| || || ||||| || || || || |||||| Sbjct 284462 TCAATAGTATCGGAGGCCTCAACTTCCAATGTAATAGTTTTACCGGTGAGAGTCTTAACA 284403 Query 46583 AAGATTTGCAT 46593 || |||||||| Sbjct 284402 AAAATTTGCAT 284392 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 46365 TGCCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGG 46424 |||| || | | |||||| || || ||||||||| ||||||||| ||||||||||| | Sbjct 284164 TGCCACCACGAAGACGCAATACAAGGTGCAATGTAGACTCCTTTTGAATATTGTAGTCAG 284105 Query 46425 ATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCG 46484 | || ||||| | || || ||||| || ||||| || || || | ||||| | | Sbjct 284104 AAAGTGTGCGGCCATCTTCAAGCTGTTTACCGGCAAAGATTAATCTTTGCTGCATTGGAG 284045 Query 46485 GCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 46544 | | | || || || ||| ||| ||| | || | | |||||| | || | Sbjct 284044 GAATACCTTCTTTATCTTCGATTTTCGCCTTCACGTTCTCAATTGTGTCGGAGGCCTCGA 283985 Query 46545 CATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 | |||| || || ||||| || || || || || || || |||||||| Sbjct 283984 CCTCCAGAGTTATTGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCAT 283936 >seq4730 Length=3448589 Score = 86.0 bits (94), Expect = 7e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 ||||| | | |||||| |||| || | || ||||| ||||| |||||||| ||| Sbjct 2521254 CCTCCGCGAAGACGCAAAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGAT 2521313 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 ||||| || |||| || | ||| || || || || || || || || || |||| || Sbjct 2521314 AGAGTTCGTCCGTCTTCTAACTGTTTACCAGCAAAGATTAAACGTTGTTGTTCGGGAGGT 2521373 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| || ||||| || | | | | |||||| | || || Sbjct 2521374 ATTCCTTCCTTATCTTGTATCTTAGCTTTCACGTTTTCTATCGTGTCCGAAGCCTCAACT 2521433 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593 |||| ||||||||||| ||||| || ||||| |||||||| ||||| Sbjct 2521434 TCCAGGGTGATGGTTTTACCCGTGAGTGTTTTTACAAAGATCTGCAT 2521480 Score = 82.4 bits (90), Expect = 9e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 46367 CCTCCTCTTAAACGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGAT 46426 || || | || |||||| |||| || | || ||||||||||| |||||||| || Sbjct 2519886 CCCCCGCGTAGACGCAAGACCAAGTGGAGGGTGGATTCCTTTTGGATGTTGTAGTCAGAA 2519945 Query 46427 AGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGC 46486 || || | |||| || | || || || || || ||||| || ||||| || | || Sbjct 2519946 AGGGTTCTTCCGTCTTCTAATTGTTTACCAGCAAAGATCAAACGTTGCTGATCTGGAGGA 2520005 Query 46487 ACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACA 46546 | | ||||| || ||||| ||| | || | | ||| || | ||| || Sbjct 2520006 ATTCCTTCCTTATCTTGAATCTTGGCCTTTACATTCTCTATCGTATCTGAAGCTTCAACC 2520065 Query 46547 TCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCATT 46594 |||| |||||||| || || ||||| ||||| |||||||| |||||| Sbjct 2520066 TCCAGGGTGATGGTCTTTCCTGTCAGAGTTTTGACAAAGATCTGCATT 2520113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565149382017480