Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_013797.1 Length=108592 Score E Sequences producing significant alignments: (Bits) Value seq7268 95.1 8e-15 seq4730 87.8 1e-12 >seq7268 Length=409911 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| ||||| | ||| ||||| | ||| | |||| ||| ||||| ||||| || || | Sbjct 284847 GCCACCTCGAAGACGGAGTACAAGATGGAGAGTGGATTCCTTTTGAATATTGTAGTCTG- 284789 Query 39552 CAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAG 39609 ||| || ||| |||| || | ||||| ||| |||| || || | ||||||||| | Sbjct 284788 -AAAGCGTGCGTCCATCTTCAAGCTGTTTACCGGCAAAGATCAACCTCTGCTGATCTGGT 284730 Query 39610 GGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCC 39669 || | ||||||||||| ||||| || | || | | |||||| | | || Sbjct 284729 GGAATACCTTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCAATTGTGTCGGAGGCCTCG 284670 Query 39670 ACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || |||| ||| |||||||| || || | || || ||||| || ||||| Sbjct 284669 ACCTCCAGAGTTATTGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCAT 284620 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/217 (70%), Gaps = 4/217 (2%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACG--CGTT 39562 || ||||| | ||| | |||| ||| ||||| ||||| || || | ||| || ||| Sbjct 284606 CGAAGTACAAGATGGAGAGTGGATTCCTTTTGAATATTGTAGTCTG--AAAGCGTGCGTC 284549 Query 39563 CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTT 39622 |||| || | ||||| || |||| ||||| | ||||||||| | ||| | |||||||| Sbjct 284548 CATCTTCAAGCTGTTTGCCCGCAAAGATTAATCTCTGCTGATCTGGGGGAATGCCTTCTT 284489 Query 39623 TGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAA 39682 |||| ||||| || | || | | || || | | || || ||||| |||| Sbjct 284488 TGTCTTGGATTTTCGCCTTTACATTCTCAATAGTATCGGAGGCCTCAACTTCCAATGTAA 284429 Query 39683 TTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 | |||||||| || | ||| || || || || ||||| Sbjct 284428 TAGTTTTACCGGTGAGAGTCTTAACAAAAATTTGCAT 284392 Score = 86.0 bits (94), Expect = 4e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTTCA 39564 || ||||| | ||||| || || ||||| ||||| || || | | |||| || Sbjct 282326 CGAAGTACAAGATGCAGTGTAGACTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGTCCA 282267 Query 39565 TCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTCTTTG 39624 || || | ||||| ||| | || || || | ||||||||| | || | ||||||||| Sbjct 282266 TCTTCAAGCTGTTTTCCGGCGAAGATCAACCTCTGCTGATCTGGTGGAATACCTTCTTTG 282207 Query 39625 TCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGTAATT 39684 || |||||| |||| | | | |||||||| ||| || || || || ||| Sbjct 282206 TCTTGAATTTTTGCCTTAACATTTTCAATTGTGTCTGATGCTTCAACCTCTAAGGTTATT 282147 Query 39685 GTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 ||||| || || || || || |||||||||||||| Sbjct 282146 GTTTTTCCAGTCAATGTCTTAACGAAGATCTGCAT 282112 Score = 86.0 bits (94), Expect = 4e-12 Identities = 161/232 (69%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 39492 GCCGCCTCGCAAACGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGC 39551 ||| ||||| | |||||||| | ||||| || ||||| || ||||| ||||| | Sbjct 283023 GCCTCCTCGAAGCCGCAGTACAAGATGCAGTGTAGACTCTTTCTGAATATTGTAATCAG- 282965 Query 39552 CAAAACG--CGTTCATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAG 39609 ||| || ||| |||| || | ||||| || | || || || | ||||||||| | Sbjct 282964 -AAAGCGTTCGTCCATCTTCAAGCTGTTTGCCAGCGAAGATCAACCTCTGCTGATCAGGT 282906 Query 39610 GGTACGCCTTCTTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTG-CGCTTTC 39668 || | ||||||||||| ||||| || | || ||| ||||| | ||| ||| Sbjct 282905 GGAATACCTTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCTATCGTGTCAGACGC-TTC 282847 Query 39669 CACGTCCAAAGTAATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCATG 39720 || |||| ||| |||||||| || || | || || ||||| || |||||| Sbjct 282846 AACCTCCAGAGTTATTGTTTTTCCTGTAAGGGTCTTAACGAAAATTTGCATG 282795 >seq4730 Length=3448589 Score = 87.8 bits (96), Expect = 1e-12 Identities = 151/219 (69%), Gaps = 8/219 (4%) Strand=Plus/Plus Query 39505 CGCAGTACCAAATGCAAAGTGCTTTCTTTTTGTATATTATAATCGGCCAAAACGCGTT-- 39562 |||| |||||||||| ||| || || ||||||||||| |||| || | ||| Sbjct 2520810 CGCAAGACCAAATGCAGAGTAGACTCCTTCTGTATATTATAGTCGG----AAAGAGTTCT 2520865 Query 39563 --CATCGTCCAATTGTTTCCCGCCAAAAATTAAACGCTGCTGATCCGAGGGTACGCCTTC 39620 |||| || |||||||| || |||| || |||||||||||||| | || | ||||| Sbjct 2520866 ACCATCTTCTAATTGTTTACCAGCAAAGATCAAACGCTGCTGATCTGGTGGAATTCCTTC 2520925 Query 39621 TTTGTCGCATATTTTTTGTTTAATCGTCGCTACTGTGTCTGCGCTTTCCACGTCCAAAGT 39680 || || || || ||| | || ||| || |||| ||| || |||| || Sbjct 2520926 CTTATCTTGAATCTTGGCTTTCACGTTCTCTATCGTATCTGAAGCTTCAACTTCCAGGGT 2520985 Query 39681 AATTGTTTTACCCGTTAAAGTTTTTACGAAGATCTGCAT 39719 || || || || || | |||||| || ||||||||||| Sbjct 2520986 GATGGTCTTCCCTGTCAGAGTTTTGACAAAGATCTGCAT 2521024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 347316261289367