Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq4277 127 2e-24 seq4730 114 1e-20 seq7268 102 8e-17 seq4970 100 3e-16 >seq4277 Length=1076248 Score = 127 bits (140), Expect = 2e-24 Identities = 144/192 (75%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| |||||||| || || || ||||| |||||||||||| |||| |||||||| | Sbjct 1004212 AATGCAGATATTCGTGAAGACCCTAACGGGTAAAACCATCACCCTCGAGGTCGAGGCGTC 1004271 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||| | || | || |||| ||||| || ||||||||| | ||||| Sbjct 1004272 TGATACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCA 1004331 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||||| ||| || ||||| | || || | ||||||||| ||| ||||| Sbjct 1004332 GCAACGTCTCATTTTCGCCGGAAAACAATTAGAAGATGGTCGCACCCTCTCCGATTACAA 1004391 Query 38423 CATCCA-AAAGG 38433 ||||| ||||| Sbjct 1004392 TATCCAGAAAGG 1004403 Score = 127 bits (140), Expect = 2e-24 Identities = 144/192 (75%), Gaps = 1/192 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| |||||||| || || || ||||| |||||||||||| |||| |||||||| | Sbjct 1007055 AATGCAGATATTCGTGAAGACCCTAACGGGTAAAACCATCACCCTCGAGGTCGAGGCGTC 1007114 Query 38303 CGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | ||| | || | || |||| ||||| || ||||||||| | ||||| Sbjct 1007115 TGATACCATCGAAAATGTGAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCTGACCA 1007174 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 || || ||||||| ||| || ||||| | || || | ||||||||| ||| ||||| Sbjct 1007175 GCAACGTCTCATTTTCGCCGGAAAACAATTAGAAGATGGTCGCACCCTCTCCGATTACAA 1007234 Query 38423 CATCCA-AAAGG 38433 ||||| ||||| Sbjct 1007235 TATCCAGAAAGG 1007246 >seq4730 Length=3448589 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || || |||||||| |||||||| |||||||||||| | || || ||||| | Sbjct 2521480 ATGCAGATCTTTGTAAAAACACTCACGGGTAAAACCATCACCCTGGAAGTTGAGGCTTCG 2521421 Query 38304 GACAGCGT-GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 |||| | | ||||| | |||| || || | || || || ||||| || |||| || Sbjct 2521420 GACACGATAGAAAACG-TGAAAGCTAAGATACAAGATAAGGAAGGAATACCTCCCGAACA 2521362 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 ||| || | || | || || |||||| | || |||| || || || |||||||| Sbjct 2521361 ACAACGTTTAATCTTTGCTGGTAAACAGTTAGAAGACGGACGAACTCTATCAGACTACAA 2521302 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 |||||| |||||| | || || || ||||| ||||| Sbjct 2521301 CATCCAGAAGGAATCCACCCTCCACTTGGTTTTGCGT 2521265 Score = 82.4 bits (90), Expect = 8e-11 Identities = 150/217 (69%), Gaps = 2/217 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || || || |||||||| || || || ||||||||| | || || || || | Sbjct 2520569 AATGCAGATCTTTGTCAAAACGCTTACAGGAAAGACCATCACCCTGGAAGTTGAAGCTTC 2520510 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 || | | | |||| | |||| || || | || || || || ||||| |||| | Sbjct 2520509 AGATACGATAGAGAACG-TGAAAGCCAAGATTCAAGATAAGGAAGGTATTCCTCCCGATC 2520451 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | || || |||||| |||| || | | ||||| |||||| | Sbjct 2520450 AGCAGCGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGTAGAACCCTTTCCGACTATA 2520391 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 | || || ||||| | || ||||||||||| |||| Sbjct 2520390 ATATACAGAAGGAGTCTACTCTGCATTTGGTCTTGCG 2520354 >seq7268 Length=409911 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| ||||| || ||||| || || | || || |||||| || Sbjct 283708 ATGCAAATTTTTGTTAAAACCCTCACTGGAAAAACTATTACATTGGAAGTTGAGGCCTCC 283767 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | ||||| | ||||||||||| ||||| | ||||| Sbjct 283768 GACACAATTGAGAATGTAAAGGCGAAAATTCAAGACAAAGAGGGTATTCCTCCAGACCAG 283827 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | ||| || || ||||| || || | ||||| || |||||||| Sbjct 283828 CAGAGGTTGATCTTCGCCGGTAAGCAGCTTGAAGATGGCCGCACACTTTCTGACTACAAT 283887 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || ||||| ||| | || || ||| | || || ||| Sbjct 283888 ATTCAAAAAGAATCCACTCTTCATCTTGTACTTCGT 283923 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || ||||| || || | || || |||||| || Sbjct 284392 ATGCAAATTTTTGTTAAGACTCTCACCGGTAAAACTATTACATTGGAAGTTGAGGCCTCC 284451 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | ||||||| |||||||| || |||||| | || || Sbjct 284452 GATACTATTGAGAATGTAAAGGCGAAAATCCAAGACAAAGAAGGCATTCCCCCAGATCAG 284511 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| | | || | |||||||||||||| || || | ||||| || |||||||| Sbjct 284512 CAGAGATTAATCTTTGCGGGCAAACAGCTTGAAGATGGACGCACGCTTTCAGACTACAAT 284571 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || ||||||||| | || || ||| | || || || Sbjct 284572 ATTCAAAAGGAATCCACTCTCCATCTTGTACTTCG 284606 Score = 100 bits (110), Expect = 3e-16 Identities = 151/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || ||||| || || || ||||| || || | || || |||||| | Sbjct 284848 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACTATTACATTGGAAGTAGAGGCCTCT 284907 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | |||||| | ||||||||||| ||||| | ||||| Sbjct 284908 GACACAATTGAGAATGTAAAGGCAAAAATTCAAGACAAAGAGGGTATTCCTCCAGACCAG 284967 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | ||| || |||||||| || || | ||||| || |||||||| Sbjct 284968 CAGAGGTTGATCTTCGCCGGTAAACAGCTTGAAGATGGTCGCACACTTTCTGACTACAAT 285027 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || || |||||| | || || ||| | || || || Sbjct 285028 ATTCAGAAGGAATCCACTCTTCATCTTGTACTTCG 285062 Score = 98.7 bits (108), Expect = 1e-15 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| ||||| || || || | || || ||||| || Sbjct 286216 ATGCAAATTTTTGTGAAGACTCTCACTGGCAAGACTATTACTTTAGAAGTTGAGGCTTCC 286275 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | || | ||| || | || |||||||| || || | ||||| Sbjct 286276 GATACTATCGAGAATGTGAAGGCAAAGATTCAGGATAAAGAGGGCATCCCACCAGACCAG 286335 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | ||| || ||||||||||| || | ||||| || ||||||||| Sbjct 286336 CAGAGGTTGATCTTCGCTGGTAAACAGCTGGAAGATGGCCGCACACTTTCGGACTACAAC 286395 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 || ||||||||| | || || ||| | || || ||| || | || || Sbjct 286396 ATTCAAAAGGAATCCACTCTTCATCTTGTACTTCGTCTGCGTGGTGG 286442 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || ||||| || || | || || || || | Sbjct 283024 ATGCAAATTTTCGTTAAGACCCTTACAGGAAAAACAATAACTCTGGAGGTTGAAGCGTCA 283083 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | ||| |||| | |||||| | |||||||| || ||||| | || || Sbjct 283084 GACACAATTGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAG 283143 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | ||||||||||||||| || || | ||||| || |||||||| Sbjct 283144 CAGAGGTTGATCTTCGCGGGCAAACAGCTCGAAGATGGCCGCACACTTTCTGACTACAAT 283203 Query 38424 ATCCAAAAGGA 38434 || |||||||| Sbjct 283204 ATTCAAAAGGA 283214 Score = 96.9 bits (106), Expect = 3e-15 Identities = 136/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || || ||||| || || | || || ||||| || Sbjct 283252 ATGCAAATTTTTGTTAAGACCCTTACAGGTAAAACAATAACGCTGGAAGTTGAGGCATCC 283311 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | ||| | |||| ||||| | |||||||| || |||||| | |||||| Sbjct 283312 GATACTATAGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCCCCAGACCAA 283371 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | ||| ||||||||||| || || | || || || |||||||| Sbjct 283372 CAGAGGTTGATCTTCGCAGGCAAACAGCTCGAAGATGGCCGTACACTTTCTGACTACAAT 283431 Query 38424 ATCCAAAAGGA 38434 || |||||||| Sbjct 283432 ATTCAAAAGGA 283442 Score = 95.1 bits (104), Expect = 1e-14 Identities = 150/215 (70%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| ||||| || || || || || ||||| || || | || || |||||| | Sbjct 285532 ATGCAAATTTTCGTTAAGACCCTGACTGGTAAAACTATTACATTGGAAGTAGAGGCCTCT 285591 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | || | ||| || | || ||||||||||| || | ||||| Sbjct 285592 GACACTATTGAGAATGTGAAGGCAAAGATTCAGGATAAAGAGGGAATACCACCAGACCAG 285651 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||| || | || | ||| || |||||||| || || | ||||| || |||||||| Sbjct 285652 CAGAGGTTGATCTTCGCTGGTAAACAGCTTGAAGATGGCCGCACACTTTCTGACTACAAT 285711 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 || |||||||| | || |||||| | || || || Sbjct 285712 ATTCAAAAGGAGTCTACACTGCATCTTGTACTTCG 285746 Score = 87.8 bits (96), Expect = 2e-12 Identities = 151/217 (70%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || || || || |||||||| || | || || |||||| | Sbjct 283480 ATGCAAATTTTTGTTAAGACCCTTACCGGAAAAACCATAACGTTGGAAGTAGAGGCCTCT 283539 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCA 38362 || | | | |||| | || |||||| | || ||||||||||| || | || || Sbjct 283540 GATACAATTGAGAACG-TCAAGTCAAAAATTCAGGATAAAGAGGGAATCCCACCAGAACA 283598 Query 38363 ACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 38422 |||| | | || | ||| || || ||||| || || | | ||| || ||||||||| Sbjct 283599 ACAGAGATTGATCTTCGCCGGGAAGCAGCTTGAAGATGGCCACACACTTTCCGACTACAA 283658 Query 38423 CATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 || || |||||| | || |||||| | || || ||| Sbjct 283659 TATTCAGAAGGAATCTACACTGCATCTTGTACTACGT 283695 >seq4970 Length=98340 Score = 100 bits (110), Expect = 3e-16 Identities = 159/226 (70%), Gaps = 4/226 (2%) Strand=Plus/Plus Query 132917 CCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAAGCCGGGCATGAGGCCGCGTTTTT 132976 |||| || || ||||||||||||||||| || || | ||| |||||||| || | ||| | Sbjct 65743 CCTCATCTCTAGAAATGAGTTCGTTGCTAAATGTAAGGCCAGGCATGAGACCTCTTTTCT 65802 Query 132977 TGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAAGACGCCCTCGACGGCCGCGAAAG 133036 | | |||||| || ||||||||||| || || || | ||| || || || || || | Sbjct 65803 TCAACCAAAAGATAGCGGCGAAACTACCGCTGAAAAATATGCCTTCCACCGCAGCAAATG 65862 Query 133037 CCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGCGATCCAGCGCAGCGCCCATTCGG 133096 | || | || ||| ||| ||||| | | | ||||| || ||||| | | Sbjct 65863 CGACTATTCGTTCGGGGAAAGTGGCAGACTCGTGGTTTATCCAATTCAATGCCCAGTTAG 65922 Query 133097 CCTTTTCTTTG--ACGCACGGCATCGTTTCGATGGCGTTCAACAAA 133140 | |||||| | |||||||||| ||||||| ||||| || ||| Sbjct 65923 C--TTTCTTAGCAACGCACGGCAGATTTTCGATTGCGTTAAATAAA 65966 Score = 87.8 bits (96), Expect = 2e-12 Identities = 114/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 133186 GAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAAGCCGTAAAAGCACCGCGCC 133245 ||||||||||| ||||| || || ||||| || | || || || |||||||| || ||| Sbjct 66075 GAATACATTTCTGAGTGGACATTTTCCATAGCAACCTGGAAACCATAAAAGCAGCGTGCC 66134 Query 133246 TCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATTTTCGTTGACGATGCCGTCG 133305 || || || || |||||| ||| | || || ||||| |||||||| || || || Sbjct 66135 TCTGTAACTTGGACCTCTTGACTGAACCTTTCTACAAGATTCTCGTTGACAATTCCATCA 66194 Query 133306 CTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATG 133343 || ||||| || || | |||||| |||||||| Sbjct 66195 GAAGCAGCGAAGAATGCTAACACGTGAGATATGAAATG 66232 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500094029036160