Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq11430 107 2e-18 seq4970 102 9e-17 seq6000 82.4 9e-11 >seq11430 Length=555723 Score = 107 bits (118), Expect = 2e-18 Identities = 216/314 (69%), Gaps = 15/314 (5%) Strand=Plus/Plus Query 48279 TTCCTTTTAAG-TTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGC 48337 ||| |||| || ||||| |||||| | ||||| ||||||||||||||||| || || || Sbjct 43787 TTCTTTTTCAGATTCAA-AAAGTCAAAAATATCTGCATGCCATGGTTCTAAGTAGATAGC 43845 Query 48338 CATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAAC 48397 | | | || |||| ||||| || |||||||| | ||||| || ||||| || || || Sbjct 43846 GAATGCTCCAGGTCTCTTATTCCCACCTTGATCAACATATCGTGCTGTATTATTGTATAC 43905 Query 48398 TCTTAACATTGGGACAATACCATTTGATATA---CCA-TTGGT-----TCCCGAAATATA 48448 ||| | ||||| || | ||||| || | | | | | ||| || | ||| | Sbjct 43906 TCTGAGAATTGGAACTAGTCCATTGGACAGATGGCGACTAGGTACTGCGCCAGCAATCTG 43965 Query 48449 ACTTCCACTAGCTCTTATATTACTA--ATTGAAATACCTATACCACCTGCCATTTTAGAT 48506 |||| | || | ||| | | |||| | ||| |||||||| || |||| Sbjct 43966 TGTTCCTTTTGCCCGAATACAATGAACATTG--AGACCAATACCACCAGCTGATTTACTA 44023 Query 48507 ATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTT 48566 || || ||||| | ||| | ||||||||||||||| ||| ||||| || |||| | Sbjct 44024 ATAAGCGCACATCTTTTCAATGTATCATAAATTCCTACTACGCTATCTTCAGTCATTGTC 44083 Query 48567 AATAGAAAACAACT 48580 | || |||||||| Sbjct 44084 AGAAGGAAACAACT 44097 Score = 84.2 bits (92), Expect = 2e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 48918 CTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATATA 48977 ||||| ||||||| ||||||||||| | ||||||||||| ||||| || || ||| || Sbjct 44627 CTAAAACTTTTTTTCGTTTCTTTATGTAAATTAGATATAGCGATTCTCGCTGCCAATTTA 44686 Query 48978 GCATAATCTGGATG 48991 |||||||||||||| Sbjct 44687 GCATAATCTGGATG 44700 >seq4970 Length=98340 Score = 102 bits (112), Expect = 9e-17 Identities = 137/191 (72%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 19225 TCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATGAATATTTTCTATAGCC 19284 || || | ||||| ||| ||||| ||| ||||||||||| || | |||||| ||||| Sbjct 66048 TCCTTGATATATGTATCGATCAACAAAGAATACATTTCTGAGTGGACATTTTCCATAGCA 66107 Query 19285 ATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTCACTACAAAATCTTTCG 19344 | ||| || || ||||| || | ||| ||||| | || || || || || ||||| Sbjct 66108 ACCTGGAAACCATAAAAGCAGCGTGCCTCTGTAACTTGGACCTCTTGACTGAACCTTTCT 66167 Query 19345 ACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGCTAATACATGTTTAATA 19404 || | ||| || || || ||||||||| ||| || || |||||||| || || || Sbjct 66168 ACAAGATTCTCGTTGACAATTCCATCAGAAGCAGCGAAGAATGCTAACACGTGAGATATG 66227 Query 19405 AAATGTTTTTC 19415 ||||| || || Sbjct 66228 AAATGCTTCTC 66238 >seq6000 Length=2059021 Score = 82.4 bits (90), Expect = 9e-11 Identities = 93/122 (76%), Gaps = 2/122 (2%) Strand=Plus/Minus Query 48916 CACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATTCTAGCAGCTAATA 48975 ||||||| ||||||| |||||||| || | ||| ||||||| ||||| || || |||| Sbjct 206312 CACTAAAACTTTTTTTCGTTTCTTTGTGTAAATTGGATATAGCGATTCTCGCTGCCAATA 206253 Query 48976 TAGCATAATCTGGATGAATTGTTGTACAT-GTACTAGATATTTCTGCTGCTAATATATCT 49034 ||||||||||||||| || || || ||| ||| | | |||||||| | ||||| Sbjct 206252 CAGCATAATCTGGATGGATGGTGGT-CATAGTAACCGCAGTCTCTGCTGCGAGATTATCT 206194 Query 49035 AA 49036 || Sbjct 206193 AA 206192 Score = 82.4 bits (90), Expect = 9e-11 Identities = 123/174 (71%), Gaps = 4/174 (2%) Strand=Plus/Minus Query 47865 ACAAACCTATTAAGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTA 47924 |||||| |||| | || || || || | ||||||| |||| || |||| ||| ||| | Sbjct 207884 ACAAACATATTGACGGCAATCGAAGCCAAATTACATGCAGCAACTTCATCCGGACTAGAA 207825 Query 47925 TATTGTATTATTTCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATT- 47983 ||||||| ||||| | || | |||| |||||| || || || | |||||| ||||| Sbjct 207824 TATTGTACAATTTCTGTGCAGAAGTTACTACATTTTATTGTTCCTATATTTTGGTGATTT 207765 Query 47984 -ATTNNNNTTGTTACATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTA 48036 ||| | |||| || || || | ||| |||| ||||||||||||| Sbjct 207764 GATTTACGAT--TACAATGATCTTTATACAACATGTAAGGAGTTCCAGTTTCTA 207713 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562020274890360