Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq11430 104 1e-17 seq6000 93.3 2e-14 >seq11430 Length=555723 Score = 104 bits (114), Expect = 1e-17 Identities = 111/143 (78%), Gaps = 4/143 (3%) Strand=Plus/Plus Query 26000 TTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGC- 26058 |||||||| |||| || || ||||||||||||| |||||||||||||| |||||||| Sbjct 43787 TTCTTTTTCAGATTCAAAAAGTCAAAAATATCTGCATGCCATGGTTCTAAGTAGATAGCG 43846 Query 26059 AAAACTAC-CTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAA 26117 || || | | |||| ||| ||||||||||| || |||| ||| || | |||| | | Sbjct 43847 AATGCTCCAGGTCTCTTATTC--CCACCTTGATCAACATATCGTGCTGTATTATTGTATA 43904 Query 26118 CTTTCAACATTGGAACTAATCCA 26140 || | | |||||||||| |||| Sbjct 43905 CTCTGAGAATTGGAACTAGTCCA 43927 >seq6000 Length=2059021 Score = 93.3 bits (102), Expect = 2e-14 Identities = 195/287 (68%), Gaps = 4/287 (1%) Strand=Plus/Minus Query 26000 TTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCA 26059 |||||||| |||| || |||||||||||||||| |||||||||||||| ||||| || Sbjct 207141 TTCTTTTTCAGATTCAAAAAATCAAAAATATCTGCATGCCATGGTTCTAAGTAGATGGCG 207082 Query 26060 AAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACT 26119 || || ||| || | ||||| || || | | || ||| | | |||| | ||| Sbjct 207081 AATGCTCCAGGTCTATTATCCCCACCCTGTTCAATGCATAGTGCTGAATTATTGTATACT 207022 Query 26120 TTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTC 26179 | | |||||| |||| ||| | || | || ||||| | |||| | |||| | Sbjct 207021 CTAAGCATTGGGACTAGTCCGTTGGACACACCTAGTGTGCCAGCAATCAGTGTTCCTCTT 206962 Query 26180 GATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACA- 26238 | | ||| ||| ||| | ||| || ||||||| |||| || | ||||| Sbjct 206961 GCCCGAATGCAATGAACATTGAGACCAATATCACCAGCTGATTTACTAACA--AGCACAC 206904 Query 26239 ATC-TGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATT 26284 ||| | | |||||| |||||||| |||||||||| | ||||| Sbjct 206903 ATCTTTTCAATGTATCATAAATTCCTACTATGCTATCATCAGTCATT 206857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253001145628925