Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_021247.1 Length=228750 Score E Sequences producing significant alignments: (Bits) Value seq7268 127 3e-24 seq4730 116 5e-21 seq4970 107 3e-18 >seq7268 Length=409911 Score = 127 bits (140), Expect = 3e-24 Identities = 143/190 (75%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| || ||||||| |||||||||||||| ||||| || | ||| Sbjct 285076 ATGCAAATTTTCGTTAAGACTCTGACTGGTAAAACTATTACATTGGAAGTAGAGGCCTCT 285135 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || ||||| ||||| || ||||||||||| || || || ||||| Sbjct 285136 GACACAATTGAGAATGTGAAGGCAAAAATTCAGGATAAAGAAGGGATCCCCCCGGAACAG 285195 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | |||||| |||||||| |||||| | || | || ||||| ||| Sbjct 285196 CAGAGATTGATCTTTGCCGGGAAGCAGCTTGAAGATGGCCACACGCTCTCCGATTACAAT 285255 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 285256 AT-TCAAAAG 285264 Score = 125 bits (138), Expect = 1e-23 Identities = 150/204 (74%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| ||||||| | |||||||||||||||||||| ||||| || | || Sbjct 283708 ATGCAAATTTTTGTTAAAACCCTCACTGGAAAAACTATTACATTGGAAGTTGAGGCCTCC 283767 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||||| ||||| ||||| || || |||||||| || Sbjct 283768 GACACAATTGAGAATGTAAAGGCGAAAATTCAAGACAAAGAGGGTATTCCTCCAGACCAG 283827 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | |||||||||||||| |||||| | | || | || || || ||| Sbjct 283828 CAGAGGTTGATCTTCGCCGGTAAGCAGCTTGAAGATGGCCGCACACTTTCTGACTACAAT 283887 Query 156003 ATATCCAAAGAGGCGACGCTTCAT 156026 || ||||| | || |||||| Sbjct 283888 ATTCAAAAAGAATCCACTCTTCAT 283911 Score = 123 bits (136), Expect = 4e-23 Identities = 121/156 (78%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||||||| | |||||||||||||||||||| ||||| || | ||| Sbjct 284848 ATGCAAATTTTTGTTAAAACACTTACTGGAAAAACTATTACATTGGAAGTAGAGGCCTCT 284907 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| || || || ||||| ||||| ||||| || || |||||||| || Sbjct 284908 GACACAATTGAGAATGTAAAGGCAAAAATTCAAGACAAAGAGGGTATTCCTCCAGACCAG 284967 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || ||||| | |||||||| ||||| |||||| Sbjct 284968 CAGAGGTTGATCTTCGCCGGTAAACAGCTTGAAGAT 285003 Score = 123 bits (136), Expect = 4e-23 Identities = 142/190 (75%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| || ||||||| |||||||||||||| ||||| || | ||| Sbjct 285988 ATGCAAATTTTCGTTAAGACTCTGACTGGTAAAACTATTACATTGGAAGTAGAGGCCTCT 286047 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || ||||| || || || |||||||| | || || ||||| || Sbjct 286048 GACACTATTGAGAATGTGAAGGCGAAGATCCAGGATAAAGAGAGAATCCCACCAGACCAG 286107 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || | ||||| | |||||||| ||||| |||||| | | ||| | |||||||||||| Sbjct 286108 CAGCGGTTGATCTTCGCCGGTAAACAGCTTGAAGATGGCCGCACTCTTTCAGATTATAAT 286167 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 286168 AT-TCAAAAG 286176 Score = 114 bits (126), Expect = 2e-20 Identities = 119/156 (76%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | || |||||||| || || || ||||| || | ||| Sbjct 283480 ATGCAAATTTTTGTTAAGACCCTTACCGGAAAAACCATAACGTTGGAAGTAGAGGCCTCT 283539 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || ||||| || |||||||| || || || ||||||||| Sbjct 283540 GATACAATTGAGAACGTCAAGTCAAAAATTCAGGATAAAGAGGGAATCCCACCAGAACAA 283599 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || |||||||| | ||||| |||||||| |||||| Sbjct 283600 CAGAGATTGATCTTCGCCGGGAAGCAGCTTGAAGAT 283635 Score = 114 bits (126), Expect = 2e-20 Identities = 140/190 (74%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | || || |||||||||||||| ||||| || | || Sbjct 284392 ATGCAAATTTTTGTTAAGACTCTCACCGGTAAAACTATTACATTGGAAGTTGAGGCCTCC 284451 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || ||||| ||||| ||||||||||| || ||||| || Sbjct 284452 GATACTATTGAGAATGTAAAGGCGAAAATCCAAGACAAAGAAGGCATTCCCCCAGATCAG 284511 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || ||||| || | ||| || || ||||| |||||| | || | ||||| || ||| Sbjct 284512 CAGAGATTAATCTTTGCGGGCAAACAGCTTGAAGATGGACGCACGCTTTCAGACTACAAT 284571 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 284572 AT-TCAAAAG 284580 Score = 114 bits (126), Expect = 2e-20 Identities = 150/205 (73%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| || ||||||| |||||||||||||| ||||| || | ||| Sbjct 285532 ATGCAAATTTTCGTTAAGACCCTGACTGGTAAAACTATTACATTGGAAGTAGAGGCCTCT 285591 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | |||| || ||||| || || || |||||||| || ||||| ||||| || Sbjct 285592 GACACTATTGAGAATGTGAAGGCAAAGATTCAGGATAAAGAGGGAATACCACCAGACCAG 285651 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | || ||||| ||||| |||||| | | || | || || || ||| Sbjct 285652 CAGAGGTTGATCTTCGCTGGTAAACAGCTTGAAGATGGCCGCACACTTTCTGACTACAAT 285711 Query 156003 ATATCCAAA-GAGGCGACGCTTCAT 156026 || || ||| ||| | || || ||| Sbjct 285712 AT-TCAAAAGGAGTCTACACTGCAT 285735 Score = 109 bits (120), Expect = 8e-19 Identities = 122/162 (75%), Gaps = 1/162 (1%) Strand=Plus/Plus Query 155818 ATAAA-ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAA 155876 ||||| ||||| || || |||| ||||||||||||||||| || || ||||| || ||| Sbjct 282106 ATAAATATGCAGATCTTCGTTAAGACATTGACTGGAAAAACAATAACCTTAGAGGTTGAA 282165 Query 155877 GATTCTGATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCA 155936 | || || | ||| ||| || || ||||| ||||| |||||||| || || ||| Sbjct 282166 GCATCAGACACAATTGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGTATTCCACCA 282225 Query 155937 GAACAACAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGAT 155978 || || || || ||||| | ||||| || ||||| |||||| Sbjct 282226 GATCAGCAGAGGTTGATCTTCGCCGGAAAACAGCTTGAAGAT 282267 Score = 107 bits (118), Expect = 3e-18 Identities = 133/182 (73%), Gaps = 0/182 (0%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| | || || | || || ||||| || || | ||||| |||| || Sbjct 286672 ATGCAAATTTTTGTAAAGACCCTCACGGGGAAAACAATAACGCTGGAAGTTGAAGCCTCC 286731 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| |||| || || || |||||| ||||| |||||||| || || ||||| || Sbjct 286732 GATACTATTGAGAATGTCAAGGCTAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 286791 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || |||||||| | |||||||| |||||||||||| | | || | || || || ||| Sbjct 286792 CAGAGATTGATCTTCGCCGGTAAACAGCTCGAAGATGGCCGCACACTTTCTGACTACAAT 286851 Query 156003 AT 156004 || Sbjct 286852 AT 286853 Score = 105 bits (116), Expect = 1e-17 Identities = 138/190 (73%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || | ||||||||||| || || | || ||||| | || Sbjct 282340 ATGCAAATTTTCGTCAAGACCCTTACTGGAAAAACAATAACTCTGGAGGTCGAGGCCTCC 282399 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| ||||| ||||| |||||||| || || ||||| || Sbjct 282400 GACACAATTGAGAACGTGAAGGCGAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAG 282459 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | ||||||||| |||||||||||| | | || | || || || ||| Sbjct 282460 CAGAGGTTGATCTTTGCCGGTAAACAGCTCGAAGATGGCCGCACACTTTCTGACTACAAT 282519 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 282520 AT-TCAAAAG 282528 Score = 105 bits (116), Expect = 1e-17 Identities = 138/190 (73%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| ||| |||| || | || || ||||| || || | ||||| || | || Sbjct 283252 ATGCAAATTTTTGTTAAGACCCTTACAGGTAAAACAATAACGCTGGAAGTTGAGGCATCC 283311 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||| || ||| |||||| ||||| |||||||| || || ||||| ||| Sbjct 283312 GATACTATAGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCCCCAGACCAA 283371 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | || || || |||||||||||| | | || | || || || ||| Sbjct 283372 CAGAGGTTGATCTTCGCAGGCAAACAGCTCGAAGATGGCCGTACACTTTCTGACTACAAT 283431 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 283432 AT-TCAAAAG 283440 Score = 102 bits (112), Expect = 1e-16 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || | ||||||||||| |||||||||||||| || | || Sbjct 286444 ATGCAAATTTTCGTCAAGACCCTTACTGGAAAAACGATTACATTAGAAGTAGAGGCATCG 286503 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 |||| ||| ||||| || ||||| ||||| || ||||| || || ||| || Sbjct 286504 GATACAATTGAGAACGTAAAGGCGAAAATCCAAGACAAGGAAGGTATTCCCCCAATCCAG 286563 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| |||| || | |||||||| ||||| |||||| | | || | || || || ||| Sbjct 286564 CAACGATTAATCTTCGCCGGTAAACAGCTTGAAGATGGCCGTACACTTTCTGACTACAAT 286623 Query 156003 ATATCCAAA-GAGGCGACGCTTCATTTAGTGTT 156034 || || ||| || | || |||||| | || || Sbjct 286624 AT-TCAAAAGGAATCCACTCTTCATCTTGTATT 286655 Score = 96.9 bits (106), Expect = 5e-15 Identities = 136/190 (72%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || | || || | || |||||||| || || | || ||||| | || Sbjct 283936 ATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACAATAACTCTGGAGGTCGAGGCCTCC 283995 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| |||||||| ||||| ||||||||||||| || |||||| || Sbjct 283996 GACACAATTGAGAACGTGAAGGCGAAAATCGAAGATAAAGAAGGTATTCCTCCAATGCAG 284055 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 |||||||| || | ||||||||| ||||| |||||| | | || | || || || ||| Sbjct 284056 CAAAGATTAATCTTTGCCGGTAAACAGCTTGAAGATGGCCGCACACTTTCTGACTACAAT 284115 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 284116 AT-TCAAAAG 284124 Score = 87.8 bits (96), Expect = 3e-12 Identities = 134/190 (71%), Gaps = 1/190 (1%) Strand=Plus/Plus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 |||||||| || |||| || | || |||||||| || || | || || |||| || Sbjct 283024 ATGCAAATTTTCGTTAAGACCCTTACAGGAAAAACAATAACTCTGGAGGTTGAAGCGTCA 283083 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | ||| ||| || || ||||| ||||| |||||||| || || ||||| || Sbjct 283084 GACACAATTGAAAATGTTAAGGCAAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAG 283143 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 || || ||||| | || || || |||||||||||| | | || | || || || ||| Sbjct 283144 CAGAGGTTGATCTTCGCGGGCAAACAGCTCGAAGATGGCCGCACACTTTCTGACTACAAT 283203 Query 156003 ATATCCAAAG 156012 || || |||| Sbjct 283204 AT-TCAAAAG 283212 >seq4730 Length=3448589 Score = 116 bits (128), Expect = 5e-21 Identities = 135/182 (74%), Gaps = 0/182 (0%) Strand=Plus/Minus Query 155823 ATGCAAATATTTATTAAAACATTGACTGGAAAAACTATTACATTAGAAGTCGAAGATTCT 155882 ||||| || ||| | |||||| | || || ||||| || || | ||||| || | ||| Sbjct 2521480 ATGCAGATCTTTGTAAAAACACTCACGGGTAAAACCATCACCCTGGAAGTTGAGGCTTCG 2521421 Query 155883 GATAATATTTTAAACGTGAAAAATAAAATACAAGATAAAGAAGGCATACCTCCAGAACAA 155942 || | || |||||||||| ||| ||||||||||| ||||| |||||||| |||||| Sbjct 2521420 GACACGATAGAAAACGTGAAAGCTAAGATACAAGATAAGGAAGGAATACCTCCCGAACAA 2521361 Query 155943 CAAAGATTGATTTATGCCGGTAAGCAGCTCGAAGATACCAGAACTTTATCAGATTATAAT 156002 ||| | || || | ||| ||||| ||| | ||||| ||||| ||||||| || || Sbjct 2521360 CAACGTTTAATCTTTGCTGGTAAACAGTTAGAAGACGGACGAACTCTATCAGACTACAAC 2521301 Query 156003 AT 156004 || Sbjct 2521300 AT 2521299 >seq4970 Length=98340 Score = 107 bits (118), Expect = 3e-18 Identities = 145/202 (72%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 18411 TTTCTTTGGAATCTTTTATATAAGTGTCGATTAACAAAGAATACATTTCAGAATGTATGC 18470 ||||||| | || || ||||| || ||||| ||||||||||||||||| || || | Sbjct 66037 TTTCTTTAGCGTCCTTGATATATGTATCGATCAACAAAGAATACATTTCTGAGTGGACAT 66096 Query 18471 TTTCCATAGCTATCTGAAAACTATAAAACGATCTAGCCTCGGGATATTGAATCTCGCTAT 18530 |||||||||| | ||| |||| |||||| | | ||||| | | ||| | ||| | Sbjct 66097 TTTCCATAGCAACCTGGAAACCATAAAAGCAGCGTGCCTCTGTAACTTGGACCTCTTGAC 66156 Query 18531 AAAATCTTTCTACCAAATTCTCATTAACTATACCGTCAGCAGATGCGAAAAATGCCAAAA 18590 || |||||||| | |||||| || || || || |||| || ||||| ||||| || | Sbjct 66157 TGAACCTTTCTACAAGATTCTCGTTGACAATTCCATCAGAAGCAGCGAAGAATGCTAACA 66216 Query 18591 CATATTTAATGAAATGTTTTTC 18612 | | |||||||| || || Sbjct 66217 CGTGAGATATGAAATGCTTCTC 66238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 731756739308400