Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq4527 122 3e-22 seq8296 95.1 4e-14 >seq4527 Length=243454 Score = 122 bits (134), Expect = 3e-22 Identities = 185/258 (72%), Gaps = 8/258 (3%) Strand=Plus/Minus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | |||||||||||| || |||||| | || |||||||| ||| Sbjct 28985 TCCATAGCCTTTATCAGACGACGCTGAATGTATCCAGTTTCTGCAGTCTTTACAGCGGTA 28926 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 || || ||||| ||||||| |||||||| ||||| | | || ||| ||| | || Sbjct 28925 TCGATAAGACCCTCACGACCTCCCATAGCGTGGAAATAAAATTCAGACGG-CGTCAAACC 28867 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGT 302750 | | | | ||| |||||||||| || | | |||||| || ||||||| |||| | Sbjct 28866 GGCTAGATACGAGTTCTCAACGAATCCTCTGGACTCGGGACCGTAATCGTC---CTTGAT 28810 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 || ||||||| || || ||| ||||| | || || || || || |||||||| || Sbjct 28809 GAAATGTGGCAACGTTCTCTTCCGGAAGCCGAAGGGAATTCGTTTACCTTCAACGTTTTG 28750 Query 302811 CTGTCCCAGGCACGAAAT 302828 ||| |||| ||| | ||| Sbjct 28749 CTGACCCACGCAAGCAAT 28732 >seq8296 Length=186150 Score = 95.1 bits (104), Expect = 4e-14 Identities = 149/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 60142 TGTGAAAATATACCTCTCGGAT-GCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATT 60200 |||||||||||| | | || | |||||||| || || ||| | || || || ||||||| Sbjct 26884 TGTGAAAATATAAC-GTGGGCTCGCTGCGTCTTTTCCTCCCGTTAGTCGTGTACCAAATT 26942 Query 60201 GTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAA 60260 | ||| ||||||||| | |||||||| || || ||||||||||| |||||| || Sbjct 26943 GACCGATTGGCTGGAGCAAGTTAATGTTATTGCTTCCCACGAAATTTTGTGCGAGATTAA 27002 Query 60261 CAATAG-CACCATTTAAACTGGC--TTCACCGTGATGATATCCAGAATGTTCTGAAACAT 60317 ||| | |||| || | | ||||||||| ||||| | |||||||| | ||| Sbjct 27003 TAATTGTTGCCAT---AAGAGACATTTCACCGTGGTGATACGCTGAATGTTCAGCCACAG 27059 Query 60318 ATCCACTGAATTGTGCGACTTTAATTTC 60345 | ||| || || || ||||| | ||| Sbjct 27060 AACCAGCTAACTGAGCAACTTTCACTTC 27087 Score = 95.1 bits (104), Expect = 4e-14 Identities = 149/208 (72%), Gaps = 8/208 (4%) Strand=Plus/Plus Query 60142 TGTGAAAATATACCTCTCGGAT-GCTGCGTCCTTGCCACCCATAAGACGGGTTCCAAATT 60200 |||||||||||| | | || | |||||||| || || ||| | || || || ||||||| Sbjct 29493 TGTGAAAATATAAC-GTGGGCTCGCTGCGTCTTTTCCTCCCGTTAGTCGTGTACCAAATT 29551 Query 60201 GTCCGTTTGGCTGGAATAGATTAATGTTGTTAGAGCCTACGAAATTTTGAGCGAGACCAA 60260 | ||| ||||||||| | |||||||| || || ||||||||||| |||||| || Sbjct 29552 GACCGATTGGCTGGAGCAAGTTAATGTTATTGCTTCCCACGAAATTTTGTGCGAGATTAA 29611 Query 60261 CAATAG-CACCATTTAAACTGGC--TTCACCGTGATGATATCCAGAATGTTCTGAAACAT 60317 ||| | |||| || | | ||||||||| ||||| | |||||||| | ||| Sbjct 29612 TAATTGTTGCCAT---AAGAGACATTTCACCGTGGTGATACGCTGAATGTTCAGCCACAG 29668 Query 60318 ATCCACTGAATTGTGCGACTTTAATTTC 60345 | ||| || || || ||||| | ||| Sbjct 29669 AACCAGCTAACTGAGCAACTTTCACTTC 29696 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471580012303863