Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5202 235 5e-57 seq7268 95.1 1e-14 >seq5202 Length=325290 Score = 235 bits (260), Expect = 5e-57 Identities = 288/393 (73%), Gaps = 0/393 (0%) Strand=Plus/Minus Query 34255 CCGTGATAACCGCATGCTTTGCAGCCCTGACAGATAATGTTCTTTTTAGCGGACACGATG 34314 ||||||| ||||| || ||||| ||||| |||| | || || ||| || | Sbjct 136823 CCGTGATGGCCGCACGCCTTGCACCCCTGCGAGATTGTCGATTTCTTCGCGCTGACTACC 136764 Query 34315 AGCTCAGTCTCCGGGTTGTCACATTCCGGACACAACACAAACTTGCGGATGAAACCATCA 34374 ||||| || ||||| ||||| || |||| || | || |||| ||||| || || || Sbjct 136763 AGCTCGGTTTCCGGATTGTCGCAGGCCGGGCATAGGACGTACTTCCGGATAAATCCGTCG 136704 Query 34375 AGCAGGTCCTGTAACTTAACGGAGTCGTGGGAGCCGTTGACGATGAATCGTTCGTTTTTG 34434 || || || || || || | || |||||| || ||||| || ||||||| |||||| ||| Sbjct 136703 AGGAGATCTTGCAATTTGATGGCGTCGTGTGAACCGTTCACAATGAATCTTTCGTTCTTG 136644 Query 34435 TAATCGACCTGCGTTTGCGCGCCCAGCTCGCACCCGAAGTACTTTGTCGGGTAAATGGCC 34494 | |||| || || ||||| |||||||| || ||||||||||| || || || ||||| Sbjct 136643 AAGTCGAATTGTGTCTGCGCACCCAGCTCACAGCCGAAGTACTTGGTAGGATAGGTGGCC 136584 Query 34495 GGACGTCCAAGCGCCTTGGCGATTTCGGGCATGTTGACGATGACAGTCTTGATGCCGTTG 34554 || | || | || || || | ||| |||||| ||||| || |||||||| ||||| Sbjct 136583 GGTCTGCCGATGGCTTTCGCCACGTCGACCATGTTCACGATCACCGTCTTGATCCCGTTA 136524 Query 34555 CCCTTTCCTTCGACCTTGGCGCAGATGCGCGGCATTTTGTAGCGGTAGAACGCGTCCGCC 34614 || || ||||||||||| || ||| |||||||| ||||| ||||| ||||| || | Sbjct 136523 CCTTTCCCTTCGACCTTCGCCTGGATCCGCGGCATCTTGTACCGGTAAAACGCATCGCTC 136464 Query 34615 ACATTGCGGTTAACGTTCACAGTCCCCATCGTG 34647 || ||||| || ||||||| ||||||| ||| Sbjct 136463 ACGTTGCGATTCACGTTCAGGCTCCCCATGGTG 136431 >seq7268 Length=409911 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || ||| | ||||| ||||| ||||| | ||| ||| | | Sbjct 284392 ATGCAAATTTTTGTTAAGACTCTCACCGGTAAAACTATTACATTGGAAGTTGAGGCCTCC 284451 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| | | | ||||| ||| || |||||||||||| | ||| ||||| Sbjct 284452 GATACTATTGAGAATGTAAAGGCGAAAATCCAAGACAAAGAAGGCATTCCCCCAGATCAG 284511 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || ||| | || | |||||| |||||||| || |||| | || | | || ||||| Sbjct 284512 CAGAGATTAATCTTTGCGGGCAAACAGCTTGAAGATGGACGCACGCTTTCAGACTACAAT 284571 Query 110453 ATTCAAAAAGAATCTAC 110469 |||||||| ||||| || Sbjct 284572 ATTCAAAAGGAATCCAC 284588 Score = 95.1 bits (104), Expect = 1e-14 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 110273 ATGCAAATATTTGTCAAAACTTTAACCGGCAAAACCATTACCGTCGAAACGGAGCCTGAC 110332 |||||||| ||||| || ||| | || ||||| || ||||| | ||| ||| || | Sbjct 286216 ATGCAAATTTTTGTGAAGACTCTCACTGGCAAGACTATTACTTTAGAAGTTGAGGCTTCC 286275 Query 110333 GATACTGTCGGCCAGGTAAAACAGAAGATTGCCGACAAAGAAGGCGTGCCCGTGGATCAA 110392 |||||| ||| | || || |||||| || ||||| ||| | || || || Sbjct 286276 GATACTATCGAGAATGTGAAGGCAAAGATTCAGGATAAAGAGGGCATCCCACCAGACCAG 286335 Query 110393 CAAAGACTTATTTATGCGGGTAAACAGCTGGAGGATGCCAGAACAATGGCGGATTACAAC 110452 || || | || | || |||||||||||||| |||| | | ||| | |||| |||||| Sbjct 286336 CAGAGGTTGATCTTCGCTGGTAAACAGCTGGAAGATGGCCGCACACTTTCGGACTACAAC 286395 Query 110453 ATTCAAAAAGAATCTAC 110469 |||||||| ||||| || Sbjct 286396 ATTCAAAAGGAATCCAC 286412 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412778208043307