Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_023177.1 Length=124688 Score E Sequences producing significant alignments: (Bits) Value seq7268 116 3e-21 seq4730 100 2e-16 >seq7268 Length=409911 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| || ||| | || ||||| || ||||| | ||| |||||| | Sbjct 286216 ATGCAAATTTTTGTGAAGACTCTCACTGGCAAGACTATTACTTTAGAAGTTGAGGCTTCC 286275 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| ||| | || || ||||||| |||||||| ||| | || || ||| Sbjct 286276 GATACTATCGAGAATGTGAAGGCAAAGATTCAGGATAAAGAGGGCATCCCACCAGACCAG 286335 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | || |||||||||||||| || | | ||| | ||||||||||| Sbjct 286336 CAGAGGTTGATCTTCGCTGGTAAACAGCTGGAAGATGGCCGCACACTTTCGGACTACAAC 286395 Query 107736 ATTCAAAAGGAGTCTAC 107752 ||||||||||| || || Sbjct 286396 ATTCAAAAGGAATCCAC 286412 Score = 96.9 bits (106), Expect = 3e-15 Identities = 149/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| || || | ||||| ||||| || || | ||| ||||| | Sbjct 283252 ATGCAAATTTTTGTTAAGACCCTTACAGGTAAAACAATAACGCTGGAAGTTGAGGCATCC 283311 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || ||| || ||| || |||||||| | ||| || || Sbjct 283312 GATACTATAGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCCCCAGACCAA 283371 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | || || |||||||| || || | | ||| | | |||||||| Sbjct 283372 CAGAGGTTGATCTTCGCAGGCAAACAGCTCGAAGATGGCCGTACACTTTCTGACTACAAT 283431 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||||||||||||||| |||||| | || ||| Sbjct 283432 ATTCAAAAGGAGTCTACATTGCACCTTGTATTG 283464 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/201 (71%), Gaps = 8/201 (4%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| || ||| | || || ||||| ||||| | ||| ||||| | Sbjct 284392 ATGCAAATTTTTGTTAAGACTCTCACCGGTAAAACTATTACATTGGAAGTTGAGGCCTCC 284451 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | ||||| || || || ||||||||| | ||| |||||| Sbjct 284452 GATACTATTGAGAATGTAAAGGCGAAAATCCAAGACAAAGAAGGCATTCCCCCAGATCAG 284511 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGA----GGACGCCAAAACAATGGCGGACTA 107731 |||||| | || | |||||| |||||||| || |||||| || | | ||||| Sbjct 284512 CAGAGATTAATCTTTGCGGGCAAACAGCTTGAAGATGGACGC----ACGCTTTCAGACTA 284567 Query 107732 CAACATTCAAAAGGAGTCTAC 107752 ||| ||||||||||| || || Sbjct 284568 CAATATTCAAAAGGAATCCAC 284588 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| || || ||| | ||||| ||||| || || | ||| ||||| | Sbjct 284164 ATGCAAATTTTCGTTAAGACTCTTACAGGTAAAACAATAACGCTGGAAGTTGAGGCATCC 284223 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || ||| || ||| || |||||||| | ||| ||| ||| Sbjct 284224 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCCCCGGACCAG 284283 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | || ||||||||||| || || | | ||| | | ||||| || Sbjct 284284 CAGAGGTTGATCTTCGCTGGTAAACAGCTTGAAGATGGCCGCACACTTTCTGACTATAAT 284343 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 ||||| ||||||||||| |||| Sbjct 284344 ATTCAGAAGGAGTCTACACTGCA 284366 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 |||||||||||||| || || | ||||| ||||| || || | ||| ||||| | Sbjct 282568 ATGCAAATTTTTGTTAAGACCCTTACAGGTAAAACAATAACGCTGGAAGTTGAGGCATCC 282627 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 |||||| | | | || ||| || ||| || |||||||| | ||| ||| ||| Sbjct 282628 GATACTATTGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCCCCGGACCAG 282687 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | || ||||||||||| || || | | ||| | | ||||| || Sbjct 282688 CAGAGGTTGATCTTCGCTGGTAAACAGCTTGAAGATGGCCGCACACTTTCTGACTATAAT 282747 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGG 107782 ||||||||||| || || | || | || ||||| | ||||| || Sbjct 282748 ATTCAAAAGGAATCCACTCTCCATCTTGTACTGAGACTTCGAGGAGG 282794 Score = 87.8 bits (96), Expect = 1e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| ||||| || | || || ||||| || || | || ||||| | Sbjct 282340 ATGCAAATTTTCGTCAAGACCCTTACTGGAAAAACAATAACTCTGGAGGTCGAGGCCTCC 282399 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || || ||| || |||||||| | || |||||| Sbjct 282400 GACACAATTGAGAACGTGAAGGCGAAAATTCAAGACAAAGAAGGTATTCCACCAGATCAG 282459 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | ||| ||||||||||| || || | | ||| | | |||||||| Sbjct 282460 CAGAGGTTGATCTTTGCCGGTAAACAGCTCGAAGATGGCCGCACACTTTCTGACTACAAT 282519 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||||||||||||||| |||||| | || ||| Sbjct 282520 ATTCAAAAGGAGTCTACATTGCACCTTGTATTG 282552 Score = 82.4 bits (90), Expect = 6e-11 Identities = 146/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| ||||| || | ||||| ||||| || || | || ||||| | Sbjct 283936 ATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACAATAACTCTGGAGGTCGAGGCCTCC 283995 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || || | | | || || || || | ||||||||||| | || ||| Sbjct 283996 GACACAATTGAGAACGTGAAGGCGAAAATCGAAGATAAAGAAGGTATTCCTCCAATGCAG 284055 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 || ||| | || | ||| ||||||||||| || || | | ||| | | |||||||| Sbjct 284056 CAAAGATTAATCTTTGCCGGTAAACAGCTTGAAGATGGCCGCACACTTTCTGACTACAAT 284115 Query 107736 ATTCAAAAGGAGTCTACGTTGCACATGGTGTTG 107768 ||||||||||||||||| |||||| | || ||| Sbjct 284116 ATTCAAAAGGAGTCTACATTGCACCTTGTATTG 284148 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 107556 ATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGGC 107615 ||||||||||| || || || | || || ||||| ||||| | ||| ||||| Sbjct 285532 ATGCAAATTTTCGTTAAGACCCTGACTGGTAAAACTATTACATTGGAAGTAGAGGCCTCT 285591 Query 107616 GATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCAG 107675 || ||| | | | || || ||||||| |||||||| || | || || ||| Sbjct 285592 GACACTATTGAGAATGTGAAGGCAAAGATTCAGGATAAAGAGGGAATACCACCAGACCAG 285651 Query 107676 CAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAAC 107735 ||||| | || | || ||||||||||| || || | | ||| | | |||||||| Sbjct 285652 CAGAGGTTGATCTTCGCTGGTAAACAGCTTGAAGATGGCCGCACACTTTCTGACTACAAT 285711 Query 107736 ATTCAAAAGGAGTCTACGTTGCA 107758 ||||||||||||||||| |||| Sbjct 285712 ATTCAAAAGGAGTCTACACTGCA 285734 >seq4730 Length=3448589 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || ||||||||||| | ||||| || ||||| ||| | ||| || ||| Sbjct 2520569 AATGCAGATCTTTGTCAAAACGCTTACAGGAAAGACCATCACCCTGGAAGTTGAAGCTTC 2520510 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| |||||| ||||| ||||| | || ||||| Sbjct 2520509 AGATACGATAGAGAACGTGAAAGCCAAGATTCAAGATAAGGAAGGTATTCCTCCCGATCA 2520450 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| || | || | ||| ||||||||| |||| || | | ||| | | ||||| || Sbjct 2520449 GCAGCGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGTAGAACCCTTTCCGACTATAA 2520390 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || || ||||||||||| |||| |||| ||| || | || || |||| Sbjct 2520389 TATACAGAAGGAGTCTACTCTGCATTTGGTCTTGCGACTTCGCGGTGGAA 2520340 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || |||||||||||| | ||||| || ||||| ||| | || || ||| Sbjct 2520113 AATGCAGATCTTTGTCAAAACTCTGACAGGAAAGACCATCACCCTGGAGGTTGAAGCTTC 2520054 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | ||||| |||||| ||||| ||||| | || ||||| Sbjct 2520053 AGATACGATAGAGAATGTAAAGGCCAAGATTCAAGATAAGGAAGGAATTCCTCCAGATCA 2519994 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 ||| | | || | ||| |||||||| | || |||| | ||| | | |||||||| Sbjct 2519993 GCAACGTTTGATCTTTGCTGGTAAACAATTAGAAGACGGAAGAACCCTTTCTGACTACAA 2519934 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 ||| |||||||| || || | ||| |||| ||| | | || ||||||| Sbjct 2519933 CATCCAAAAGGAATCCACCCTCCACTTGGTCTTGCGTCTACGCGGGGGAA 2519884 Score = 91.5 bits (100), Expect = 1e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 107555 AATGCAAATTTTTGTCAAAACTTTAACAGGCAAAACCATTACCGTCGAAACGGAGGCTGG 107614 |||||| || |||||||||||| | ||||| || ||||| ||| | ||| || ||| Sbjct 2521025 AATGCAGATCTTTGTCAAAACTCTGACAGGGAAGACCATCACCCTGGAAGTTGAAGCTTC 2520966 Query 107615 CGATACTGTCGGCCAGGTAAAACAAAAGATTGCCGATAAAGAAGGCGTGCCCGTGGATCA 107674 ||||| | | | || ||| |||||| ||||| ||||| | || ||||| Sbjct 2520965 AGATACGATAGAGAACGTGAAAGCCAAGATTCAAGATAAGGAAGGAATTCCACCAGATCA 2520906 Query 107675 GCAGAGACTTATTTATGCGGGTAAACAGCTGGAGGACGCCAAAACAATGGCGGACTACAA 107734 |||| | | || | ||| |||||||| | || || | | ||| | | ||||| || Sbjct 2520905 GCAGCGTTTGATCTTTGCTGGTAAACAATTAGAAGATGGTAGAACTCTTTCCGACTATAA 2520846 Query 107735 CATTCAAAAGGAGTCTACGTTGCACATGGTGTTGAGATTGCGAGGGGGAA 107784 || || ||||||||||| |||| |||| ||| || | || || |||| Sbjct 2520845 TATACAGAAGGAGTCTACTCTGCATTTGGTCTTGCGACTTCGCGGAGGAA 2520796 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 398815552342711