Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_023639.1 Length=1168989 Score E Sequences producing significant alignments: (Bits) Value seq8549 154 1e-31 seq6243 152 4e-31 seq4708 131 1e-24 seq8037 96.9 3e-14 seq9559 91.5 1e-12 seq7163 86.0 5e-11 >seq8549 Length=361584 Score = 154 bits (170), Expect = 1e-31 Identities = 153/198 (77%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 282322 TTTGTCTTGGTTTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAAT 282381 |||||||| | ||||||| | |||||||||| |||||| || ||||| ||||| || | Sbjct 31969 TTTGTCTTCGGTTTTATCCATGCCATACGCAAGAGCAGCTGCTGTTGGCTCATTGATTAC 32028 Query 282382 TCTCAAAACATTAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATC 282441 ||| | |||||||||||||| || || |||||||| || ||||||||||| ||||| Sbjct 32029 TCTAAGCACATTAAGACCAGCGATCTGGCCAGCATCTTTCGTTGCTTGTCTTTGCGAATC 32088 Query 282442 GTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTTTTCCAATATAAGCGCT 282501 ||||||||||||||||||||||| || |||| | | ||| | | | ||| || Sbjct 32089 ATTAAAATATGCAGGAACAGTAATTACAGCATTTCTGACTGAAGTACTTAAATATGCTTC 32148 Query 282502 TGCTGTTTGTTTCATTTT 282519 ||| |||| |||||||| Sbjct 32149 TGCGGTTTCCTTCATTTT 32166 Score = 93.3 bits (102), Expect = 3e-13 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 86119 CCGTATGCAAGAGCTGCTGCAGTTGGTTCATTAATTATTTTAAGAACATCTAAACCCGCA 86178 || || |||||||| ||||| ||||| ||||| |||| | |||| |||| | ||| || Sbjct 31991 CCATACGCAAGAGCAGCTGCTGTTGGCTCATTGATTACTCTAAGCACATTAAGACCAGCG 32050 Query 86179 ATTTTAGCAGAATCAAGAGTTGCTTGTCTCTGTGCGTCATTAAAATATGCTGGTACAGTA 86238 || | ||| ||| ||||||||||| || | |||||||||||||| || |||||| Sbjct 32051 ATCTGGCCAGCATCTTTCGTTGCTTGTCTTTGCGAATCATTAAAATATGCAGGAACAGTA 32110 Query 86239 ATAACTGCTTT 86249 || || || || Sbjct 32111 ATTACAGCATT 32121 Score = 91.5 bits (100), Expect = 1e-12 Identities = 97/128 (76%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 281437 AAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGC 281496 || ||| ||||||||||| | |||||| |||||||| ||||| || || |||||| | || Sbjct 29084 AACAATGCCATTGGCATCGATATCAAACGTGACTTCTATTTGTGGCACTCCTCTCGGTGC 29143 Query 281497 AGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCG 281556 ||||| || || | | | ||||| ||||| | ||||| || |||| | || ||| Sbjct 29144 GGGTGGAATACCAACAAGAGTAAATTGTCCCAAAAGTTTATTGTCATTAGCCATTTCTCG 29203 Query 281557 TTCACCCT 281564 |||||||| Sbjct 29204 TTCACCCT 29211 >seq6243 Length=857481 Score = 152 bits (168), Expect = 4e-31 Identities = 674/1048 (64%), Gaps = 18/1048 (2%) Strand=Plus/Plus Query 281442 TACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTCTGAGCAGGTG 281501 ||||||||| || | || || || |||||||| ||||||| || ||| | ||||||| Sbjct 290546 TACCATTGGAGTCAATGTCGAAGGTAACTTCAATCTGAGGGATTCCCCTCGGCGCAGGTG 290605 Query 281502 GGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAATTTTCGTTCAC 281561 | || || | | || | |||||| |||||||||| | || | |||||| | Sbjct 290606 GAATGCCCGTGAGCTCGAACTTGCCCAGAATATTATTATCCCTGGTCATAGCTCGTTCTC 290665 Query 281562 CCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTAAATACTCTGG 281621 |||| ||| || || ||| ||| || || || || || || || || ||||| Sbjct 290666 CCTCATAAACCTGAATCAACACTCCAGGCTGGTTGTCGGAGTAGGTGGTGAACG-TCTGG 290724 Query 281622 ATTTTTTACAAGGA-ATTGTTGTGTTTCTATCAATAATATTGGTCATAATACCACCAGCT 281680 | | || | || || || ||||| || | || | | ||||| | || ||||| Sbjct 290725 GTCTGTTTCGTGGGTATCGTGGTGTTCCTCTTGATCAAGGTAGTCATCACGCCTCCAGCA 290784 Query 281681 GTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTGAAGTTTTTCA 281740 || || | ||| || || ||||| || || || | || | | || |||| | ||| Sbjct 290785 GTCTCGATACCGAGCGACAGAGGCGTCACGTCCAAGAGCAACAGATCCTGAACCTGTTCG 290844 Query 281741 TCAGTTTGACCAA-CAAGAATAGCTGCTTGAATAGCAGCACCATATGCAACAGCTTCATC 281799 | | ||| ||||| | || ||||| | ||| || ||||| || |||||||| || Sbjct 290845 GATTTGTCACCGTGCAAGATT-GCAGCTTGCACAGCGGCGCCATAGGCGACAGCTTCGTC 290903 Query 281800 AGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAATTTGAAAGAAGTTGTCTT-A 281858 ||| || | | | || | || ||| || ||||| |||| | || || | ||| | Sbjct 290904 AGGGTTGATCGACTTGTTCAATTCTTTGCCGTTGAAGAAATCTTGCAGTAGCT-TCTGGA 290962 Query 281859 CCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTGATTTATCCA 281918 ||| || || | | ||||| || |||| || || || | ||||||||| |||| Sbjct 290963 TCTTTGGTATCCTGGTGGATCCACCGACTAGAACGATGCTGTGAATCTGTGATTTGTCCA 291022 Query 281919 GTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTC-TAAACAAGTCTGAA 281977 || | |||| | | | || || || || || ||| |||| | || | || | Sbjct 291023 TCTTGGCATCCCTGAGAGCCTTCTCCACTGGCTCCAGAGT-GCTCCTGAAGAGATCAGCG 291081 Query 281978 CAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACAT-TATAA-TCAATTCCTTCGAACA 282035 || ||||| ||||| ||||||||||| | ||| | || || || ||||||||||||| Sbjct 291082 CAGAGTTCCTCGAACCTAGCTCTAGTA--ACCGACGTGTAGAAGTCGATTCCTTCGAACA 291139 Query 282036 AAGAATCAACTTCAATCGTAGTTTGAGTCGAAGA--AGATAGTGCACGTTTAGCACGTTC 282093 || || | || || | | ||||||||||| || ||| | | || || | ||| Sbjct 291140 GGGAGTCGATCTCTATGCTGGCCTGAGTCGAAGAGCTGAGAGTCCTC--TTGGCTCTTTC 291197 Query 282094 ACATGCTGTCCTTAGTCTTCGTAAGGCTTTTGCTGATTGA-TTCAAATCTGTTTTATATT 282152 || ||||| || | | || | ||| | | || | || | | || | || || | Sbjct 291198 GCAGGCTGTTCTCA-ACCTCCTCAGGGCTCTCTTGTTCGAGCTGAGGTCCTTCTTGTACT 291256 Query 282153 TTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTTCACCTCCCA 282212 | |||| ||| || | || | | || | | || || || || || || || | Sbjct 291257 TCCTCTGGAACTCCTGCACGAAGTGGTTCACCATCCTGTTGTCGAAGTCCTCGCCACCAA 291316 Query 282213 ATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAGACAAAAGAG 282272 | ||| | ||| | || | | | || | ||| | || || || | | || | | Sbjct 291317 GGTGAGTGTCTCCGGCTGTCGATTTCACCTCGAAGATGCCCTCCTCGATCGTCAGGACCG 291376 Query 282273 TAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATTCATTTCTTTGTCTTGGT 282332 ||||| || ||||| || | ||| || || || |||||| | || | || Sbjct 291377 ACACATCGAACGTGCCACCTCCTAGATCGAAGATCAGGACATTCTTCTCGCCGGCTGATC 291436 Query 282333 TTTTATCAAGACCATACGCAAAAGCAGCAGCAGTTGGTTCATTAATAATTCTCAAAACAT 282392 | || || | |||||| || | ||||| || |||||||| || || || || | ||| | Sbjct 291437 TCTTGTCCAAACCATAAGCGATCGCAGCTGCGGTTGGTTCGTTGATGATCCTGAGAACGT 291496 Query 282393 TAAGACCAGCAATTCTTCCTGCATCTTTAGTGGCTTGTCTTTGTGAATCGTTAAAATATG 282452 | || || || || || || ||||| || || ||||| || |||||||| || |||| Sbjct 291497 TCAGGCCCGCGATCGCGCCAGCGTCTTTCGTTGCCTGTCTCTGGGAATCGTTGAAGTATG 291556 Query 282453 CAGGAACAGTAATAACGGCATCTGTTAC 282480 | || || || || || || || ||||| Sbjct 291557 CTGGCACTGTGATGACTGCGTCCGTTAC 291584 >seq4708 Length=1099944 Score = 131 bits (144), Expect = 1e-24 Identities = 568/892 (64%), Gaps = 16/892 (2%) Strand=Plus/Minus Query 281432 ACATTAAGAATACCATTGGCATCCAAATCAAATGTGACTTCAATTTGAGGGACCCCTCTC 281491 ||||| || ||||| || || || | ||||| |||||||| |||||||| || || | Sbjct 782939 ACATTTAGGATACCGTTCGCGTCGATGTCAAAGGTGACTTCGATTTGAGGAACACCACGA 782880 Query 281492 TGAGCAGGTGGGATCCCTTCCAAATTAAATGTTCCCAGATTATTATTATCTTTAGTGAAT 281551 | || |||||||| || | | ||| | |||||| ||| || || || || | Sbjct 782879 GGTGCTGGTGGGATTCCGCTGAGCTCGAATTTACCCAGAAGATTGTTGTCCTTCGTCATA 782820 Query 281552 TTTCGTTCACCCTCGAAAATTTGGATAGTAACTACAGTTTGATTATCTGAATAAGTTGTA 281611 ||| || |||||| | | |||||| || | | ||| ||||| | || || || Sbjct 782819 GCTCGCTCTCCCTCGTAGACTTGGATCAATACACCGGGTTGGTTATCGGCGTAGGTAGTG 782760 Query 281612 AATACTCTGGATTTTTTACAA-GGAATTGTTGTGTTTCTATCAATAATATTGGTCATAAT 281670 || | | || ||| || | || || || ||||| || | || | | ||||| | Sbjct 782759 AA-AGTTTGAGTTTGTTTCGTTGGGATGGTCGTGTTCCTCTTGATGAGAGCAGTCATGAC 782701 Query 281671 ACCACCAGCTGTTTCTAAACCAAGAGAAAGAGGAGTGACATCAACTAGGACAATATTTTG 281730 ||| ||||| ||||| | ||| || || ||||| || || || | || | | | ||| Sbjct 782700 ACCGCCAGCAGTTTCAATACCGAGGGACAGAGGTGTAACGTCGAGAAGCAGCAAGTCTTG 782641 Query 281731 AAGTTTTTCATCAGTTTGACCAACAAGAATAGCTGCTTGAATAGCAGCACCATATGCAAC 281790 | |||| | | |||| || || || ||||| | ||||| ||||| || || Sbjct 782640 TACGGCTTCAGATTTGTCACCATGCAGGATGGCAGCTTGCACGGCAGCTCCATAAGCTAC 782581 Query 281791 AGCTTCATCAGGATTAACAGTTTCATTTAGTTTTTTACCATTGAAAAAAT-TTGAAAGAA 281849 ||| ||||||||||| | | || || | | ||| |||||||| || | || || | Sbjct 782580 AGCCTCATCAGGATTGATGGATTTGTTCAACTCTTTGCCATTGAAGAAGTCCTGCAACAG 782521 Query 281850 GTTGTCTTACCTTAGGAATACGAGATGATCCTCCAACTAATACAATTTCATGCACCTGTG 281909 || | | ||| || ||||| | ||||| || || || || || || || | || | Sbjct 782520 CTTCT-GAATCTTCGGGATACGGGTGGATCCACCTACCAAGACGATGTCGTGAATTTGAG 782462 Query 281910 ATTTATCCAGTTTTGAATCCAATAAAACTTTTTCAACGGGTTCAAGACCAGCTCTAAACA 281969 || |||| || | ||| | ||| || || || || || |||| || | Sbjct 782461 CCTTGTCCATCTTAGCATCGCGCAGCGATTTCTCTACCGGCTCGAGTGTTCCTCTGAAGA 782402 Query 281970 AGTCTGAACAAAGTTCTTCGAATTTAGCTCTAGTAAGAGTGACATTATAATCAATTCCTT 282029 || | || || |||||||| ||| || || | | | | |||||| ||| | Sbjct 782401 GATCAGCGCAGAGCTCTTCGAAACGAGCCCTTGTGATCGAGGTGTAGAAATCAACTCCCT 782342 Query 282030 CGAACAAAGAATCAACTTCAATCGTAGTTTGAGTCGAAGAAGATAGTGCACGTTTAGCAC 282089 | | | ||||| | ||||||||| | || || || || || | | ||| || || | Sbjct 782341 CATAGAGGGAATCGATTTCAATCGTTGCCTGTGTAGATGACGACAAAGTACGCTTCGCGC 782282 Query 282090 GTTCACATGCTGTCCTTAGTCTTCGTA----AGGCT--TTTGCTGATTGATTCAAATCTG 282143 | ||||| | |||| || | || | | ||| || || | ||| ||| Sbjct 782281 GCTCACAAGAAGTCCGAAGACGACGGAGAGCACGCTTGTTAGCGG------TCAGGTCTT 782228 Query 282144 TTTTATATTTTCTCTTGAAATCTTCAACACACCATGTTACAAGACGATTATCAAAATCTT 282203 | || ||||| | |||||| || | || | | || | ||| ||||||||||||| Sbjct 782227 TCTTGTATTTACGCTTGAACTCCTGTACGAAGTGGTTGACCATACGGTTATCAAAATCTT 782168 Query 282204 CACCTCCCAATTTAGTATTTCCTGACGTAGCTCTTACTTGGAAAAGTCCATCTTCAAGAG 282263 |||| || | | ||| | ||| | || | | || | || | |||||||||| | Sbjct 782167 CACCGCCAAGGTGAGTGTCTCCAGCAGTGGACTTGACCTCAAATATGCCATCTTCAATGG 782108 Query 282264 ACAAAAGAGTAACATCATGGGTTCCACCACCCATATCAAAAATAAGTACATT 282315 ||||| || |||||| ||| || ||||| | ||| || || || || || Sbjct 782107 TCAAAATAGACACATCAAAGGTGCCGCCACCAAGATCGAAGATTAGGACGTT 782056 Score = 86.0 bits (94), Expect = 5e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 282721 TTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGG 282780 ||| | |||||| ||||| || || | |||| || |||||||| | ||||| || Sbjct 779838 TTGGTTTTTGGCCGCATCGCCGATTAACCGTTCGGTATCTGTAAACGCCACATAGCTGGG 779779 Query 282781 AGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACC 282840 ||||| || || ||||||||||| || || ||||| ||||| |||| || | ||||| Sbjct 779778 TGTTGTTCGGTTTCCTTGATCATTGGCGATGATTTCCACTTTTCCATGCTGGAAGACACC 779719 Query 282841 TACACAACTAAAAGTTGTTCCTAAATCAATACCAA 282875 ||||| | || || || | ||||||||||| Sbjct 779718 AACACAGGAGTAGGTGGTACCAAGATCAATACCAA 779684 >seq8037 Length=820807 Score = 96.9 bits (106), Expect = 3e-14 Identities = 280/424 (66%), Gaps = 9/424 (2%) Strand=Plus/Plus Query 282426 CTTGTCTTTGTGAATCGTTAAAATATGCAGGAACAGTAATAACGGCATCTGTTACTTCTT 282485 ||||||| || | ||||| || || || || || |||| ||| |||| || |||| | Sbjct 410905 CTTGTCTCTGAGCGTCGTTGAAGTAGGCTGGCACGGTAACAACCGCATGAGTAACTTTCT 410964 Query 282486 TTCCAATATAAGCGCTTGCTGTTTGTTTCATTTTACTTAAAATCATTGATGAAATTTGTT 282545 | || | ||| || ||| |||| ||||||||||| | || ||| | || |||| || Sbjct 410965 TGCCCAAATACGCCTCTGCAGTTTCTTTCATTTTACCGAGAACCATAGCAGAGATTTCTT 411024 Query 282546 CTGGAG--AATATTGCTTGGATTCATTTTGATATGATACTTCAAAATATGGTTTATTACC 282603 | |||| || ||| || ||| | || ||| | | ||||| | Sbjct 411025 CGGGAGCAAAAATT--TTATCTTCGCCGTTCACCGACACTCTTATGTGAGGTTTGCTGTT 411082 Query 282604 AACATTAATAACTTTAAATGGCCAATATTTCATATCTGATTGAACACTTTGGTCATTAAA 282663 | || ||||||||||| | | || || || || ||| | |||| | Sbjct 411083 CTTTTCGATTACTTTAAATGGGAAGAACTTGATGTCGTGCTGCACAGTAGGGTCCGACCA 411142 Query 282664 ATCTCTACCAATTAATCGTTTTGCATCAAAAATAGTATTGGTTGGATTAACTG-CAGCTT 282722 || |||||||| || ||||| ||||| || | |||||| |||||| | || || Sbjct 411143 CTCCCTACCAATCAACCGTTTCGCATCGAACACAGTATTTTCTGGATTGGAGGTCAACT- 411201 Query 282723 GATATTTGGCTGCATCTCCAATCAGATGTT--CTGTC-TCTGTAAATGAAACATATGATG 282779 ||| ||| || ||||||||||||||| ||| | ||| | ||||| | || ||||| | Sbjct 411202 GATTTTTCGCAGCATCTCCAATCAGACGTTCGCCGTCGGCGGTAAACGCTACGTATGAAG 411261 Query 282780 GAGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACAC 282839 | || | | || |||||||| || || |||||||| || | ||||||| |||||| Sbjct 411262 GTGTAATTCTGTTTCCTTGATCGTTAGCTATAATTTCTGCTCTGCCATTTTTATATACAC 411321 Query 282840 CTAC 282843 | || Sbjct 411322 CGAC 411325 >seq9559 Length=304933 Score = 91.5 bits (100), Expect = 1e-12 Identities = 114/153 (75%), Gaps = 4/153 (3%) Strand=Plus/Minus Query 131183 GCCACAATAGCATTTGGTATGGGTATTAATAAACCGGATGTTAGAGTTGTTATTCATTAC 131242 || |||||||| ||||| ||||| ||| | ||||| |||| | |||| || ||| | Sbjct 74841 GCAACAATAGCGTTTGGAATGGGAATTGACAAACCAAATGTACGTTTTGTAATGCATG-C 74783 Query 131243 GGAGCTCCCAAGAAT--ATTGAAGGTTATTATCAAGAAATTGGTAGAGCAGGTCGTGATG 131300 | ||||||| ||| ||||||||||| |||||||||| ||| | || || || |||| Sbjct 74782 AGCTCTCCCAA-AATCGATTGAAGGTTACTATCAAGAAAGCGGTCGCGCTGGACGCGATG 74724 Query 131301 GAGAAAAATCTTATTGTTATGCATTTTATAATT 131333 ||||||| | | ||| | ||||||||||| Sbjct 74723 GAGAAAACGCAGACTGTATTTTATTTTATAATT 74691 >seq7163 Length=1251421 Score = 86.0 bits (94), Expect = 5e-11 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 282721 TTGATATTTGGCTGCATCTCCAATCAGATGTTCTGTCTCTGTAAATGAAACATATGATGG 282780 ||| | |||||| ||||| || || | |||| || |||||||| | ||||| || Sbjct 280011 TTGGTTTTTGGCCGCATCGCCGATTAACCGTTCGGTATCTGTAAACGCCACATAGCTGGG 279952 Query 282781 AGTTGTGCGATTACCTTGATCATTCGCAATAATTTCAACTTTACCATTTTGCCATACACC 282840 ||||| || || ||||||||||| || || ||||| ||||| |||| || | ||||| Sbjct 279951 TGTTGTTCGGTTTCCTTGATCATTGGCGATGATTTCCACTTTTCCATGCTGGAAGACACC 279892 Query 282841 TACACAACTAAAAGTTGTTCCTAAATCAATACCAA 282875 ||||| | || || || | ||||||||||| Sbjct 279891 AACACAGGAGTAGGTGGTACCAAGATCAATACCAA 279857 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3740011842343374