Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_024447.1 Length=282356 Score E Sequences producing significant alignments: (Bits) Value seq4107 109 1e-18 seq4730 102 1e-16 >seq4107 Length=822756 Score = 109 bits (120), Expect = 1e-18 Identities = 166/234 (71%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 182968 AGAAAGTATATCTATTCTATTAAACAACTCGAAAAGGCAGAAACACATGACCCTCTATGG 183027 ||||| ||||| |||||| | | || | ||||| | || || ||||| | ||||| Sbjct 362001 AGAAAATATATTTATTCTTTGCACGAATTGGAAAACTCTGAGACCCATGATGATTTATGG 362060 Query 183028 AATGCATCACAAATACAGATGATGAGAGAAGGAAAAATGCATAGTTTTTTACGAATGTAC 183087 ||||| | |||| || ||| | | | ||||||||||||| | ||||| |||||||| Sbjct 362061 AATGCTTGTCAAAATCAAATGGTAACAATAGGAAAAATGCATGGATTTTTGAGAATGTAC 362120 Query 183088 TGGGCTAAAAAGATACTTGAATGGACAAGAACTCCGGAAGATGC-TTTGAGTTATAGTAT 183146 ||||| || || ||| | |||||||| | ||| || |||||||| || || | || Sbjct 362121 TGGGCAAAGAAAATATTAGAATGGACCAAAACACCCGAAGATGCGTTAGAATGGGCCAAT 362180 Query 183147 CTATATGAACAATAAGTACGAACTAGACGGTACGGATCCTAACGGATACGTAGG 183200 ||| | || ||||| ||| |||| || |||||||| || || ||||| Sbjct 362181 -TATTTAAATAATAAATACAGTATAGATGGCTGTGATCCTAATGGCTATGTAGG 362233 >seq4730 Length=3448589 Score = 102 bits (112), Expect = 1e-16 Identities = 109/146 (75%), Gaps = 11/146 (8%) Strand=Plus/Plus Query 81637 CAAACACAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA 81696 |||| ||||||| | ||||||||||||||||| || || |||||||||| |||||||| Sbjct 2520818 CAAATGCAGAGTAGACTCCTTCTGTATATTATAGTCGGAAAGAGTTCTACCATCTTCTAA 2520877 Query 81697 -----------CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAAT 81745 ||||||| | | || ||| |||| | ||| |||||||||||||||| Sbjct 2520878 TTGTTTACCAGCAAAGATCAAACGCTGCTGATCTGGTGGAATTCCTTCCTTATCTTGAAT 2520937 Query 81746 CTTTGCTTTTATATTTTCAATCGTAT 81771 ||| ||||| | || || ||||||| Sbjct 2520938 CTTGGCTTTCACGTTCTCTATCGTAT 2520963 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/139 (74%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| | ||||||||||||||||| || || || ||||| | ||||||||| Sbjct 2520141 AGAGTGGACTCCTTCTGTATATTATAGTCGGAAAGTGTTCTTCCGTCTTCTAATTGTTTA 2520200 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| | | || ||| ||||| | ||| ||||||||||||||||||| ||| Sbjct 2520201 CCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCT 2520260 Query 81753 TTTATATTTTCAATCGTAT 81771 || | || || ||||||| Sbjct 2520261 TTCACGTTCTCTATCGTAT 2520279 Score = 95.1 bits (104), Expect = 2e-14 Identities = 103/139 (74%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA------- 81696 ||||| | |||||||| || ||||| || || |||||||||| |||||||| Sbjct 2520597 AGAGTGGACTCCTTCTGGATGTTATAGTCGGAAAGAGTTCTACCATCTTCTAATTGTTTA 2520656 Query 81697 ----CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||||| | | || ||| ||||| | ||| ||||||||||||||||||| ||| Sbjct 2520657 CCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCT 2520716 Query 81753 TTTATATTTTCAATCGTAT 81771 |||| || || ||||||| Sbjct 2520717 TTTACGTTCTCTATCGTAT 2520735 Score = 93.3 bits (102), Expect = 8e-14 Identities = 107/146 (73%), Gaps = 11/146 (8%) Strand=Plus/Plus Query 81637 CAAACACAGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA 81696 |||| ||||||| | ||||||||||||||||| || || || ||||||| ||||| || Sbjct 2520362 CAAATGCAGAGTAGACTCCTTCTGTATATTATAGTCGGAAAGGGTTCTACCATCTTCCAA 2520421 Query 81697 -----------CAAAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAAT 81745 ||||||| | || || ||| | ||| | || |||||||||||||||| Sbjct 2520422 CTGTTTACCAGCAAAGATCAATCGCTGCTGATCGGGAGGAATACCTTCCTTATCTTGAAT 2520481 Query 81746 CTTTGCTTTTATATTTTCAATCGTAT 81771 ||| ||||| | || || ||||||| Sbjct 2520482 CTTGGCTTTCACGTTCTCTATCGTAT 2520507 Score = 91.5 bits (100), Expect = 3e-13 Identities = 98/132 (74%), Gaps = 11/132 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAA-----------CAA 81699 ||||||| || || || || ||||| || ||||| | ||||||||| ||| Sbjct 2519920 ATTCCTTTTGGATGTTGTAGTCAGAAAGGGTTCTTCCGTCTTCTAATTGTTTACCAGCAA 2519979 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 |||| | | ||| ||| ||||| | ||| ||||||||||||||||||| || |||| || Sbjct 2519980 AGATCAAACGTTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTGGCCTTTACAT 2520039 Query 81760 TTTCAATCGTAT 81771 | || ||||||| Sbjct 2520040 TCTCTATCGTAT 2520051 Score = 91.5 bits (100), Expect = 3e-13 Identities = 97/130 (75%), Gaps = 11/130 (8%) Strand=Plus/Plus Query 81651 ATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAAC-----------AA 81699 |||||||||| || || || || |||||||||| | |||||||||| || Sbjct 2521288 ATTCCTTCTGGATGTTGTAGTCTGATAGAGTTCGTCCGTCTTCTAACTGTTTACCAGCAA 2521347 Query 81700 AGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCTTTTATAT 81759 |||||| | |||||| | ||| ||||| ||||||||||||| ||||| ||||| | | Sbjct 2521348 AGATTAAACGTTGTTGTTCGGGAGGTATTCCTTCCTTATCTTGTATCTTAGCTTTCACGT 2521407 Query 81760 TTTCAATCGT 81769 |||| ||||| Sbjct 2521408 TTTCTATCGT 2521417 Score = 86.0 bits (94), Expect = 1e-11 Identities = 101/139 (73%), Gaps = 11/139 (8%) Strand=Plus/Plus Query 81644 AGAGTAAATTCCTTCTGTATATTATAATCAGATAGAGTTCTACAGTCTTCTAACA----- 81698 ||||| | |||||||| || ||||| || || || ||||||| ||||| ||| Sbjct 2521053 AGAGTGGACTCCTTCTGGATGTTATAGTCGGAAAGTGTTCTACCATCTTCCAACTGTTTT 2521112 Query 81699 ------AAGATTAGTCTTTGTTGACCTGGAAGTATTTCTTCCTTATCTTGAATCTTTGCT 81752 ||||| | | || ||| ||||| | ||| ||||||||||||||||||| ||| Sbjct 2521113 CCAGCGAAGATCAAACGCTGCTGATCTGGAGGAATTCCTTCCTTATCTTGAATCTTAGCT 2521172 Query 81753 TTTATATTTTCAATCGTAT 81771 |||| ||| || ||||||| Sbjct 2521173 TTTACATTCTCTATCGTAT 2521191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 903268924028640