Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq4277 98.7 1e-15 seq7268 93.3 4e-14 seq11430 82.4 7e-11 >seq4277 Length=1076248 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 ||||||| |||||||||||| | ||| ||| | || || | || || || ||| || Sbjct 1004402 CTTTCTGGATATTGTAATCGGAGAGGGTGCGACCA-TCTTCTAATTGTTTTCCGGCGAAA 1004344 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 ||||| || |||||||| || || || ||||||||||| |||||| ||| | | Sbjct 1004343 ATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTT 1004284 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | || || | | ||| || |||| ||||| |||||| || || || || || ||| Sbjct 1004283 TCGATGGTATCAGACGCCTCGACCTCGAGGGTGATGGTTTTACCCGTTAGGGTCTTCACG 1004224 Query 133650 AAAATCTGCAT 133660 || |||||||| Sbjct 1004223 AATATCTGCAT 1004213 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/191 (72%), Gaps = 2/191 (1%) Strand=Plus/Minus Query 133471 CTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCCCGCGTAA 133529 ||||||| |||||||||||| | ||| ||| | || || | || || || ||| || Sbjct 1007245 CTTTCTGGATATTGTAATCGGAGAGGGTGCGACCA-TCTTCTAATTGTTTTCCGGCGAAA 1007187 Query 133530 ATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTTGAGCTGC 133589 ||||| || |||||||| || || || ||||||||||| |||||| ||| | | Sbjct 1007186 ATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTT 1007127 Query 133590 TCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGTTTTTACG 133649 || | || || | | ||| || |||| ||||| |||||| || || || || || ||| Sbjct 1007126 TCGATGGTATCAGACGCCTCGACCTCGAGGGTGATGGTTTTACCCGTTAGGGTCTTCACG 1007067 Query 133650 AAAATCTGCAT 133660 || |||||||| Sbjct 1007066 AATATCTGCAT 1007056 >seq7268 Length=409911 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/199 (72%), Gaps = 4/199 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || || || |||||||||||| | |||| | | | || || |||||||| || Sbjct 285272 GTGGATTCCTTTTGAATATTGTAATCGGAGAGCGTGTGGCCA-TCTTCAAGCTGCTTCCC 285214 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CT 133581 || | || | | |||||| || || ||||| ||||| || || ||| ||||| || Sbjct 285213 GGCAAAGATCAATCTCTGCTGTTCCGGGGGGATCCCTTCTTTATC-CTGAATTTTTGCCT 285155 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||||| ||||| | || ||| || || | || | ||||| || ||||||| Sbjct 285154 TCACATTCTCAATTGTGTCAGAGGCCTCTACTTCCAATGTAATAGTTTTACCAGTCAGAG 285095 Query 133642 TTTTTACGAAAATCTGCAT 133660 | || |||||||| ||||| Sbjct 285094 TCTTAACGAAAATTTGCAT 285076 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| |||||||||||| | ||| ||| | || || ||||| || || Sbjct 285956 GTGGATTCCTTCTGAATATTGTAATCGGAAAGTGTGCGACCA-TCTTCAAGCTGTTTTCC 285898 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 |||| | || | | ||||||| || ||||| || ||||| || ||| || ||| Sbjct 285897 CGCGAAGATTAATCTCTGCTGGATTGGGGGGATACCCTCCTTATCTTGGATTTTCGCCTT 285838 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||||| | ||| || || | || | ||||| || || || || Sbjct 285837 TACGTTCTCAATTGTGTCGGACGCCTCAACCTCCAGAGTTATTGTTTTTCCAGTAAGGGT 285778 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||| ||||| Sbjct 285777 CTTGACGAAAATTTGCAT 285760 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/198 (70%), Gaps = 2/198 (1%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 || ||||| || || ||||| ||||| | ||| | | | || || ||||| || || Sbjct 286184 GTAGACTCCTTTTGAATATTATAATCTGAAAGAGTGCGGCCA-TCTTCAAGCTGTTTACC 286126 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || | |||||||||||| || ||||| | || || || |||||| ||| Sbjct 286125 GGCGAAGATCAACCGCTGCTGGTCTGGTGGGATTCTCTCTTTATCCTGGATCTTCGCCTT 286066 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 | | ||||| ||||| | || ||| || || | || | ||||| || |||||||| Sbjct 286065 CACATTCTCAATAGTGTCAGAGGCCTCTACTTCCAATGTAATAGTTTTACCAGTCAGAGT 286006 Query 133643 TTTTACGAAAATCTGCAT 133660 || |||||||| ||||| Sbjct 286005 CTTAACGAAAATTTGCAT 285988 Score = 82.4 bits (90), Expect = 7e-11 Identities = 143/203 (70%), Gaps = 4/203 (2%) Strand=Plus/Minus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCG-TGGACGAGTCCTCGAGCTGCTTGCC 133522 || ||||||||||| ||||||||||| | || | | | | || || ||||| ||||| Sbjct 282992 GTAGACTCTTTCTGAATATTGTAATCAGAAAGCGTTCGTCCA-TCTTCAAGCTGTTTGCC 282934 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTG-CT 133581 ||| | || | || |||||| || || || || ||||| ||||| ||| ||| | || Sbjct 282933 AGCGAAGATCAACCTCTGCTGATCAGGTGGAATACCTTCTTTGTC-TTGAATTTTCGCCT 282875 Query 133582 TGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAG 133641 | | | ||| | |||||| | | || || || | || | ||||| || || || | Sbjct 282874 TCACGTTCTCTATCGTGTCAGACGCTTCAACCTCCAGAGTTATTGTTTTTCCTGTAAGGG 282815 Query 133642 TTTTTACGAAAATCTGCATGGCT 133664 | || |||||||| |||||| || Sbjct 282814 TCTTAACGAAAATTTGCATGCCT 282792 >seq11430 Length=555723 Score = 82.4 bits (90), Expect = 7e-11 Identities = 152/223 (68%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 148258 GATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTCGTAAACG 148317 ||||||| || || || || |||| ||| || |||| | ||| | ||| || || | | Sbjct 42130 GATTCACGACTTGGAATTCTCCGGAGAGTACTCGCCTTACATATATGTTACTAGTGTAAG 42189 Query 148318 GTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATGTACGCTA 148377 | || | |||||| ||||| || ||||| ||||| |||| || || ||||| ||| | Sbjct 42190 GCTCGATCGACTCATTGTTTCCTAAAATTTGCGCAGTCGAAGCTGTCGGCATAGGCGCGA 42249 Query 148378 CCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCCCAGTCCC 148437 || || || || | | || | || |||||||| ||||| || ||| |||| Sbjct 42250 TCAATAGAGAATTTCTAACTCCATGTTTCTTTATTTTTTCTTTCAGCGCACTCCAATCCC 42309 Query 148438 AGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAAT 148480 | | | ||| || ||||||||||| || || || || || Sbjct 42310 ACAAGTCAGTCGGAGTAACGTTCCACATATCATATTGTAGGAT 42352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483344667266760