Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5916 127 5e-24 seq11430 114 3e-20 seq6000 105 2e-17 >seq5916 Length=331216 Score = 127 bits (140), Expect = 5e-24 Identities = 124/157 (79%), Gaps = 2/157 (1%) Strand=Plus/Minus Query 305330 GTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCTCATAAAGTCAAA 305389 ||| | || ||| | |||||||| |||| ||| | ||| ||||| ||||||| ||| Sbjct 312649 GTTTTATTTAATCGACAACCATCTTTGCACAAATTAAGTATTATGGCGCATAAAGCAAAA 312590 Query 305390 GTATTATCTGGATTG-ACATTTCGATTAAATGTAAGTGCTTGTACGCCTTATAATGCGGA 305448 |||||| | | || | ||||||||||| |||| | ||| || ||||| |||||||| || Sbjct 312589 GTATTA-CAGCATCGGACATTTCGATTCAATGAATGTGTATGCACGCCGTATAATGCCGA 312531 Query 305449 TTTTGATGGAGATGAAATGAATATGCATGTACCTCAA 305485 ||||||||| |||||||||||| ||||| |||| ||| Sbjct 312530 TTTTGATGGTGATGAAATGAATCTGCATTTACCACAA 312494 >seq11430 Length=555723 Score = 114 bits (126), Expect = 3e-20 Identities = 92/111 (83%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 111045 ATCCTTGAATCACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAAT 111104 || || | ||||||||| ||||||||||||||||| || ||||||||||||||| |||| Sbjct 43226 ATTCTCGTATCACAAGTAGAAACTGGAACTCCTTACATGTTGTATAAAGATCATTGTAAT 43167 Query 111105 CGCAAATCTAATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 || ||||| ||||| ||| |||||||||| || | |||||| |||||| Sbjct 43166 CGTAAATCAAATCACCAAAATATAGGAACAATAAAATGTAGTAACTTGTGC 43116 >seq6000 Length=2059021 Score = 105 bits (116), Expect = 2e-17 Identities = 84/101 (83%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 111055 CACAAGTTGAAACTGGAACTCCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTA 111114 ||||||| ||||||||||||||||| || ||||||||||||||| |||||| ||||| | Sbjct 207707 CACAAGTAGAAACTGGAACTCCTTACATGTTGTATAAAGATCATTGTAATCGTAAATCAA 207766 Query 111115 ATCAAATGAATTTAGGAACAATTAAGTCTAGTAATTTGTGC 111155 |||| ||| |||||||||| || | |||||| || ||| Sbjct 207767 ATCACCAAAATATAGGAACAATAAAATGTAGTAACTTCTGC 207807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186621219114639