Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq7268 109 5e-19 seq4730 104 2e-17 >seq7268 Length=409911 Score = 109 bits (120), Expect = 5e-19 Identities = 143/198 (72%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||| |||||||| | ||||| ||||||||||||||| || | Sbjct 283445 GACTCCTTTTGAATATTGTAGTCAGAAAGTGTACGGCCATCTTCGAGCTGTTTGCCTGCG 283386 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | |||||| ||||| || || |||||||| || |||||| ||| | Sbjct 283385 AAGATCAACCTCTGTTGGTCTGGGGGAATACCTTCTTTGTCTTGAATTTTAGCTTTGACA 283326 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | |||||||| | ||| ||||| | ||| | |||||||| || || || || Sbjct 283325 TTTTCTATAGTATCGGATGCCTCAACTTCCAGCGTTATTGTTTTACCTGTAAGGGTCTTA 283266 Query 132110 ATGAAAATCTGCATGACT 132127 | ||||| |||||| || Sbjct 283265 ACAAAAATTTGCATGCCT 283248 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| || | ||| | | | || ||||||||||| |||||||| | || || | Sbjct 286886 CGCAATACAAGATGGAGGGTGGATTCTTTTTGAATATTGTAGTCAGAAAGTGTGCGGCCA 286827 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||||||||||||||||| |||| | | ||| |||||||| || || |||||||| Sbjct 286826 TCTTCGAGCTGTTTACCGGCGAAGATCAATCTCTGCTGATCTGGGGGAATACCTTCTTTG 286767 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| || | | || | |||||||| | || ||||| | ||| | Sbjct 286766 TCTTGAATTTTAGCCTTGACATTCTCAATAGTATCGGAGGCTTCAACTTCCAGCGTTATT 286707 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || || || || |||| ||||| ||||| Sbjct 286706 GTTTTCCCCGTGAGGGTCTTTACAAAAATTTGCAT 286672 Score = 100 bits (110), Expect = 3e-16 Identities = 139/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||| |||||||| | || || |||||| ||||||||||| | Sbjct 285725 GACTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGGCCATCTTCAAGCTGTTTACCAGCG 285666 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || ||||| ||||| || |||||||| ||| ||| |||| Sbjct 285665 AAGATCAACCTCTGCTGGTCTGGTGGTATTCCCTCTTTATCCTGAATCTTTGCCTTCACA 285606 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||| || | | ||| ||||| | || | |||||||||||||| || || Sbjct 285605 TTCTCAATAGTGTCAGAGGCCTCTACTTCCAATGTAATAGTTTTACCAGTCAGGGTCTTA 285546 Query 132110 ATGAAAATCTGCATG 132124 | |||||| |||||| Sbjct 285545 ACGAAAATTTGCATG 285531 Score = 98.7 bits (108), Expect = 9e-16 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| |||||||| |||||||| | || || |||||||||||||||||||| | Sbjct 282533 GACTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGGCCATCTTCGAGCTGTTTACCGGCA 282474 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| |||||||| || || |||||||| || |||||| |||| Sbjct 282473 AAGATCAACCTCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGAATTTTCGCCTTCACG 282414 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| | ||| || || | || | ||||| ||||| || || || Sbjct 282413 TTCTCAATTGTGTCGGAGGCCTCGACCTCCAGAGTTATTGTTTTTCCAGTAAGGGTCTTG 282354 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 282353 ACGAAAATTTGCAT 282340 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 ||||| || ||||| || ||||| | || || |||||| ||||||||||| | Sbjct 284357 GACTCCTTCTGAATATTATAGTCAGAAAGTGTGCGGCCATCTTCAAGCTGTTTACCAGCG 284298 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || || || || |||||||| || |||||| ||| | Sbjct 284297 AAGATCAACCTCTGCTGGTCCGGGGGAATACCTTCTTTGTCTTGAATTTTAGCTTTGACA 284238 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | |||||||| | ||| ||||| | ||| | |||||||| || ||||| || Sbjct 284237 TTTTCAATAGTATCGGATGCCTCAACTTCCAGCGTTATTGTTTTACCTGTAAGAGTCTTA 284178 Query 132110 ATGAAAATCTGCATG 132124 | |||||| |||||| Sbjct 284177 ACGAAAATTTGCATG 284163 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | |||||| || | ||| | | || || |||||||| ||||| ||| | || Sbjct 285297 ACGAAGGCGCAATACAAGATGGAGAGTGGATTCCTTTTGAATATTGTAATCGGAGAGCGT 285238 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 | |||||| ||||| || |||| | |||| | | ||| || || || || || || Sbjct 285237 GTGGCCATCTTCAAGCTGCTTCCCGGCAAAGATCAATCTCTGCTGTTCCGGGGGGATCCC 285178 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||||||| ||||||| |||| | || | || || | | ||| ||||| | Sbjct 285177 TTCTTTATCCTGAATTTTTGCCTTCACATTCTCAATTGTGTCAGAGGCCTCTACTTCCAA 285118 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | ||||||||||||||||| || | |||||| ||||| Sbjct 285117 TGTAATAGTTTTACCAGTCAGAGTCTTAACGAAAATTTGCAT 285076 Score = 95.1 bits (104), Expect = 1e-14 Identities = 138/195 (71%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || ||||||||||||||||| | || || |||||| ||||||||||| | Sbjct 286409 GATTCCTTTTGAATGTTGTAGTCCGAAAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCG 286350 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || ||||| || ||||| |||||||| ||| ||| |||| Sbjct 286349 AAGATCAACCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCCTGAATCTTTGCCTTCACA 286290 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||||| | ||| ||||| | || | || || ||||| ||||| || Sbjct 286289 TTCTCGATAGTATCGGAAGCCTCAACTTCTAAAGTAATAGTCTTGCCAGTGAGAGTCTTC 286230 Query 132110 ATGAAAATCTGCATG 132124 | ||||| |||||| Sbjct 286229 ACAAAAATTTGCATG 286215 Score = 93.3 bits (102), Expect = 4e-14 Identities = 137/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || |||||||| |||||||| | || || |||||| |||||||| || | | Sbjct 284585 GATTCCTTTTGAATATTGTAGTCTGAAAGCGTGCGTCCATCTTCAAGCTGTTTGCCCGCA 284526 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||||| | ||| |||||||| || ||||||||||| || ||||| || | Sbjct 284525 AAGATTAATCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGGATTTTCGCCTTTACA 284466 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | |||||||| | ||| ||||| | || | |||||||| || ||||| || Sbjct 284465 TTCTCAATAGTATCGGAGGCCTCAACTTCCAATGTAATAGTTTTACCGGTGAGAGTCTTA 284406 Query 132110 ATGAAAATCTGCAT 132123 | ||||| ||||| Sbjct 284405 ACAAAAATTTGCAT 284392 Score = 86.0 bits (94), Expect = 6e-12 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || |||||||| || ||||| | || || |||||| ||||||||||| | Sbjct 282761 GATTCCTTTTGAATATTATAGTCAGAAAGTGTGCGGCCATCTTCAAGCTGTTTACCAGCG 282702 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || || || || || |||||||| || |||||| ||| | Sbjct 282701 AAGATCAACCTCTGCTGGTCCGGGGGAATACCTTCTTTGTCTTGAATTTTAGCTTTGACA 282642 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | |||||||| | ||| ||||| | ||| | |||||||| || || || || Sbjct 282641 TTTTCAATAGTATCGGATGCCTCAACTTCCAGCGTTATTGTTTTACCTGTAAGGGTCTTA 282582 Query 132110 ATGAAAATCTGCATG 132124 | ||||| |||||| Sbjct 282581 ACAAAAATTTGCATG 282567 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGG 131987 ||||||| |||||||| |||||||| | || || ||||||||||||||| || | Sbjct 283219 TTGACTCCTTTTGAATATTGTAGTCAGAAAGTGTGCGGCCATCTTCGAGCTGTTTGCCCG 283160 Query 131988 AATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCA 132047 |||| | | ||| |||||||| || || |||||||| || ||||||| || | Sbjct 283159 CGAAGATCAACCTCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGAATTTTTGCCTTAA 283100 Query 132048 ACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTT 132107 | ||| | || || | || || || || | || | ||||| || || || || | Sbjct 283099 CATTTTCAATTGTGTCTGACGCTTCAACCTCCAGAGTTATTGTTTTTCCTGTAAGGGTCT 283040 Query 132108 TTATGAAAATCTGCATGACT 132127 | | |||||| |||||| || Sbjct 283039 TAACGAAAATTTGCATGCCT 283020 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| || | ||| | | ||||| |||||||| || || || | || || | Sbjct 286202 CGCAATACAAGATGCAATGTAGACTCCTTTTGAATATTATAATCTGAAAGAGTGCGGCCA 286143 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| ||||||||||||| |||| | ||||| || ||||| || || | |||||| Sbjct 286142 TCTTCAAGCTGTTTACCGGCGAAGATCAACCGCTGCTGGTCTGGTGGGATTCTCTCTTTA 286083 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || |||| | || | ||| || | | ||| ||||| | || | Sbjct 286082 TCCTGGATCTTCGCCTTCACATTCTCAATAGTGTCAGAGGCCTCTACTTCCAATGTAATA 286023 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||||||||||||||| || | |||||| ||||| Sbjct 286022 GTTTTACCAGTCAGAGTCTTAACGAAAATTTGCAT 285988 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || |||||||| |||||||| | || || |||||| ||||||||||||| | Sbjct 284813 GATTCCTTTTGAATATTGTAGTCTGAAAGCGTGCGTCCATCTTCAAGCTGTTTACCGGCA 284754 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| |||||||| || || |||||||| || |||||| |||| Sbjct 284753 AAGATCAACCTCTGCTGATCTGGTGGAATACCTTCTTTGTCTTGAATTTTCGCCTTCACG 284694 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| | ||| || || | || | ||||| || || || || || Sbjct 284693 TTCTCAATTGTGTCGGAGGCCTCGACCTCCAGAGTTATTGTTTTTCCTGTAAGGGTCTTG 284634 Query 132110 ATGAAAATCTGCAT 132123 | |||||| ||||| Sbjct 284633 ACGAAAATTTGCAT 284620 Score = 82.4 bits (90), Expect = 7e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||| |||||||| | || || |||||| ||||| ||||||| Sbjct 283901 GATTCTTTTTGAATATTGTAGTCAGAAAGTGTGCGGCCATCTTCAAGCTGCTTACCGGCG 283842 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | ||| || |||||||| || || ||||| || |||||| || | Sbjct 283841 AAGATCAACCTCTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGAATTTTCGCCTTTACA 283782 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | || |||| | ||| ||||| | || | ||||| ||||| || ||||| Sbjct 283781 TTCTCAATTGTGTCGGAGGCCTCAACTTCCAATGTAATAGTTTTTCCAGTGAGGGTTTTA 283722 Query 132110 ATGAAAATCTGCATGACT 132127 | ||||| |||||| || Sbjct 283721 ACAAAAATTTGCATGCCT 283704 >seq4730 Length=3448589 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||||||||| || | | | || || || || ||||||||||| | || || Sbjct 2521266 CGCAAAACCAAGTGGAGGGTGGATTCCTTCTGGATGTTGTAGTCTGATAGAGTTCGTCCG 2521325 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | ||||||||| | | |||||| ||| ||||| || |||||||| ||||| ||| Sbjct 2521326 TCTTCTAACTGTTTACCAGCAAAGATTAAACGTTGTTGTTCGGGAGGTATTCCTTCCTTA 2521385 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || || || ||||| | ||| | || || | | ||| ||||| | || | Sbjct 2521386 TCTTGTATCTTAGCTTTCACGTTTTCTATCGTGTCCGAAGCCTCAACTTCCAGGGTGATG 2521445 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 |||||||| || || ||||||| || |||||||| Sbjct 2521446 GTTTTACCCGTGAGTGTTTTTACAAAGATCTGCAT 2521480 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 ||||| |||||||| | | ||||| || || || || |||||| | || | | Sbjct 2520810 CGCAAGACCAAATGCAGAGTAGACTCCTTCTGTATATTATAGTCGGAAAGAGTTCTACCA 2520869 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 ||||| | |||||||| | | |||| | |||||| |||||||| || || ||||| ||| Sbjct 2520870 TCTTCTAATTGTTTACCAGCAAAGATCAAACGCTGCTGATCTGGTGGAATTCCTTCCTTA 2520929 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||| || ||||| | || | ||||| | | || ||||| | || | Sbjct 2520930 TCTTGAATCTTGGCTTTCACGTTCTCTATCGTATCTGAAGCTTCAACTTCCAGGGTGATG 2520989 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || || ||||||||||| | || |||||||| Sbjct 2520990 GTCTTCCCTGTCAGAGTTTTGACAAAGATCTGCAT 2521024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476536139693640