Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_026141.2 Length=4988 Score E Sequences producing significant alignments: (Bits) Value seq4171 100 9e-18 seq11379 96.9 1e-16 seq4417 96.9 1e-16 >seq4171 Length=2096611 Score = 100 bits (110), Expect = 9e-18 Identities = 66/73 (90%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||| Sbjct 1754428 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAAGGTCCCTGGTTCAAT 1754487 Query 2828 CCCGGGCTTCAGC 2840 ||| || ||| || Sbjct 1754488 CCCTGGTTTCGGC 1754500 Score = 93.3 bits (102), Expect = 1e-15 Identities = 68/78 (87%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 2764 TTAT-GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGT 2822 |||| ||| ||| |||||||| ||||||||| |||||||||||||||||| ||||| ||| Sbjct 1859497 TTATCGGCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGT 1859556 Query 2823 TCAACCCCGGGCTTCAGC 2840 |||| |||||| ||| || Sbjct 1859557 TCAATCCCGGGTTTCGGC 1859574 Score = 93.3 bits (102), Expect = 1e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||| ||||||||| |||||||||||||||||| ||||| ||||||| Sbjct 1859834 TGGCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAA 1859893 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 1859894 TCCCGGGTTTCGGC 1859907 Score = 93.3 bits (102), Expect = 1e-15 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 2767 TGGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAA 2826 |||| ||| |||||||| ||||||||| |||||||||||||||||| ||||| ||||||| Sbjct 1860167 TGGCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAA 1860226 Query 2827 CCCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 1860227 TCCCGGGTTTCGGC 1860240 Score = 89.7 bits (98), Expect = 2e-14 Identities = 63/72 (88%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 2769 GCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAACC 2828 || ||| |||||||| ||||||||| |||||||||||||||||| ||||| ||||||| | Sbjct 1859214 GCCGAAATAGCTCAGCTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAATC 1859273 Query 2829 CCGGGCTTCAGC 2840 ||||| ||| || Sbjct 1859274 CCGGGTTTCGGC 1859285 >seq11379 Length=299433 Score = 96.9 bits (106), Expect = 1e-16 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||| ||||| ||||||| Sbjct 258406 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAAT 258347 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 258346 CCCGGGTTTCGGC 258334 >seq4417 Length=306886 Score = 96.9 bits (106), Expect = 1e-16 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 2768 GGCTGAAGTAGCTCAGTTGGGAGAGCATTAGACTGAAGATCTAAAGGTCCCTGGTTCAAC 2827 ||| ||| |||||||||||||||||| |||||||||||||||||| ||||| ||||||| Sbjct 280491 GGCCGAAATAGCTCAGTTGGGAGAGCGTTAGACTGAAGATCTAAATGTCCCCGGTTCAAT 280432 Query 2828 CCCGGGCTTCAGC 2840 |||||| ||| || Sbjct 280431 CCCGGGTTTCGGC 280419 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15847415900355