Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq7268 107 2e-18 seq4277 87.8 2e-12 >seq7268 Length=409911 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 || ||||| | || ||| || | ||| || ||| |||||||||||| || ||||| | Sbjct 286214 CCGCCACGAAGCCGCAATACAAGATGCAATGTAGACTCCTTTTGAATATTATAATCTGAA 286155 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || || ||||| ||||| || || ||||||||||||||||| | || Sbjct 286154 AGAGTGCGGCCATCTTCAAGCTGTTTACCGGCGAAGATCAACCGCTGCTGGTCTGGTGGG 286095 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | ||||| || ||| |||||| ||||| | | | | ||||| | || || Sbjct 286094 ATTCTCTCTTTATCCTGGATCTTCGCCTTCACATTCTCAATAGTGTCAGAGGCCTCTACT 286035 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 |||| || || |||||||| |||| ||| || || || || ||||| Sbjct 286034 TCCAATGTAATAGTTTTACCAGTCAGAGTCTTAACGAAAATTTGCAT 285988 Score = 87.8 bits (96), Expect = 2e-12 Identities = 134/191 (70%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||||||||| || | | || || | || |||||||| ||||| || || Sbjct 286406 TCCTTTTGAATGTTGTAGTCCGAAAGTGTGCGGCCATCTTCCAGCTGTTTACCAGCGAAG 286347 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 ||||||| ||||||||| | || | || ||| || ||| |||||| ||||| | | Sbjct 286346 ATCAACCTCTGCTGGTCTGGTGGGATGCCCTCTTTATCCTGAATCTTTGCCTTCACATTC 286287 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || ||| | || || || | || || || || || || | ||| |||||| Sbjct 286286 TCGATAGTATCGGAAGCCTCAACTTCTAAAGTAATAGTCTTGCCAGTGAGAGTCTTCACA 286227 Query 35726 AATATCTGCAT 35736 || || ||||| Sbjct 286226 AAAATTTGCAT 286216 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || |||||||| ||||| || | | || || | || || ||||||||||| || || Sbjct 283898 TCTTTTTGAATATTGTAGTCAGAAAGTGTGCGGCCATCTTCAAGCTGCTTACCGGCGAAG 283839 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGT 35664 ||||||| ||||||||| | ||||| | ||| |||| | ||| ||| | ||| | | | Sbjct 283838 ATCAACCTCTGCTGGTCTGGAGGAATACCCTCTTTGT-CTTGAATTTTCGCCTTTACATT 283780 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | |||||| | || || |||| || || ||||| || || | ||||| || Sbjct 283779 CTCAATTGTGTCGGAGGCCTCAACTTCCAATGTAATAGTTTTTCCAGTGAGGGTTTTAAC 283720 Query 35725 AAATATCTGCAT 35736 ||| || ||||| Sbjct 283719 AAAAATTTGCAT 283708 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||||||||| |||||||||| | || | | || || |||||||| || ||||| Sbjct 285266 TCCTTTTGAATATTGTAATCGGAGAGCGTGTGGCCATCTTCAAGCTGCTTCCCGGCAAAG 285207 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGT 35664 ||||| | |||||| |||| || | | || || ||| ||| ||||| ||||| | | Sbjct 285206 ATCAATCTCTGCTGTTCCGGGGGGATCCCTTCTTTATCC-TGAATTTTTGCCTTCACATT 285148 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||||| | || || |||| || || |||||||| |||| ||| || || Sbjct 285147 CTCAATTGTGTCAGAGGCCTCTACTTCCAATGTAATAGTTTTACCAGTCAGAGTCTTAAC 285088 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 285087 GAAAATTTGCAT 285076 >seq4277 Length=1076248 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 35547 CCTTT-TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || || |||||||||| | ||| || | || || | || || || || || Sbjct 1004403 CCTTTCTGGATATTGTAATCGGAGAGGGTGCGACCATCTTCTAATTGTTTTCCGGCGAAA 1004344 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || |||||||| | |||| | ||||||||| |||||| ||||| | || Sbjct 1004343 ATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTT 1004284 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || || || ||||| | ||||| ||||||||||| | || ||||| Sbjct 1004283 TCGATGGTATCAGACGCCTCGACCTCGAGGGTGATGGTTTTACCCGTTAGGGTCTTCACG 1004224 Query 35726 AATATCTGCATTCTG 35740 |||||||||||| || Sbjct 1004223 AATATCTGCATTGTG 1004209 Score = 87.8 bits (96), Expect = 2e-12 Identities = 137/195 (70%), Gaps = 1/195 (1%) Strand=Plus/Minus Query 35547 CCTTT-TGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| || || |||||||||| | ||| || | || || | || || || || || Sbjct 1007246 CCTTTCTGGATATTGTAATCGGAGAGGGTGCGACCATCTTCTAATTGTTTTCCGGCGAAA 1007187 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || |||||||| | |||| | ||||||||| |||||| ||||| | || Sbjct 1007186 ATGAGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTT 1007127 Query 35666 GCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACA 35725 | | || || || || ||||| | ||||| ||||||||||| | || ||||| Sbjct 1007126 TCGATGGTATCAGACGCCTCGACCTCGAGGGTGATGGTTTTACCCGTTAGGGTCTTCACG 1007067 Query 35726 AATATCTGCATTCTG 35740 |||||||||||| || Sbjct 1007066 AATATCTGCATTGTG 1007052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450722605642920