Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq11430 125 1e-23 seq6000 120 4e-22 seq4970 105 9e-18 >seq11430 Length=555723 Score = 125 bits (138), Expect = 1e-23 Identities = 228/332 (69%), Gaps = 4/332 (1%) Strand=Plus/Plus Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAA 69175 ||||||||||||| || || | ||| || |||| |||||||| || ||||||||||| | Sbjct 42899 TACCGATAGGTCTGTGCCTTTGATTGGATCTTTTTGCTTCTGGGATTGGATAATAATTGA 42958 Query 69176 TATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAA 69235 | || || | ||||| || |||| ||||||||| ||| ||||| || || | Sbjct 42959 TGTCGATTACGTTATTCAGGTTTCTAGTAACTACTTTAGTCACTTCCTTCAGCTTTTCGA 43018 Query 69236 AATC--AAATCGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAAC 69293 |||| || | || | | | || |||||||| | || | || || | ||||| || Sbjct 43019 AATCGAAAGTTTTCGAGC--TTACGAACATATTGACGGCAATCGAAGCCAAGTTACATAC 43076 Query 69294 TGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGAT 69353 || || |||| | | | | |||||||| || || || || | ||||||||||| || Sbjct 43077 AGCAACTTCATCCGGACTAGAATATTGTACGATTTCGGTGCACAAGTTACTACATTTTAT 43136 Query 69354 AGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGG 69413 || || | |||||| ||||| || ||||| || || || | || | || Sbjct 43137 TGTTCCTATATTTTGGTGATTTGATTTACGATTACAATGATCTTTATACAACATGTAAGG 43196 Query 69414 AGTACCAGTTTCAATCTGAGATTCGATAATAG 69445 ||| |||||||| | || ||| ||| ||||| Sbjct 43197 AGTTCCAGTTTCTACTTGTGATACGAGAATAG 43228 Score = 116 bits (128), Expect = 5e-21 Identities = 218/320 (68%), Gaps = 9/320 (3%) Strand=Plus/Plus Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 || ||||| || ||||| |||| | ||| || | |||||| | |||||||||||||| Sbjct 43778 TTACCTGTGTTCTTTTTCAGATTCAAAAAGTCAAAAATATCTGCATGCCATGGTTCTAAG 43837 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 || || || | |||| |||| ||||| || || ||||| | |||| || || ||| Sbjct 43838 TAGATAGCGAATGCTCCAGGTCTCTTATTCCCACCTTGATCAACATATCGTGCTGTATTA 43897 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATT----AGAT-----TTACCATTTGTTCCA 69831 || || ||||| || || |||| | ||||| |||| || || ||| Sbjct 43898 TTGTATACTCTGAGAATTGGAACTAGTCCATTGGACAGATGGCGACTAGGTACTGCGCCA 43957 Query 69832 GAAATATAACTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATT 69891 | ||| | ||||| |||| |||||| | || | ||||| || || || || | Sbjct 43958 GCAATCTGTGTTCCTTTTGCCCGAATACAATGAACATTGAGACCAATACCACCAGCTGAT 44017 Query 69892 TTAGAGATTAGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATC 69951 ||| || || ||||| | ||||||||| ||||| || || ||| |||||| || || Sbjct 44018 TTACTAATAAGCGCACATCTTTTCAATGTATCATAAATTCCTACTACGCTATCTTCAGTC 44077 Query 69952 ATGTTAAGAAGAAAACAGCT 69971 || | ||||| ||||| || Sbjct 44078 ATTGTCAGAAGGAAACAACT 44097 Score = 95.1 bits (104), Expect = 2e-14 Identities = 176/256 (69%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 69963 AAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTG 70022 |||| | ||||||| ||| || ||||| | |||| || | ||| || ||||| || Sbjct 44169 AAAATACCTAGACAATTGTTGTCTCATAGTACACGCAAAGAAGAGTGTCGGCGATGCATG 44228 Query 70023 AGTGAACCATTTTTCAGA-AAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACT 70081 || || | ||| || ||| | ||| || ||||| |||||| || |||| | || Sbjct 44229 CGTAAAGTAACGTTCCGACAAGTA-ATTATAAGTTTCTATAGCTTTGTCGATATTCTCCT 44287 Query 70082 GATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTAT 70141 |||| || | | || || | ||| | ||| || || |||||||| || ||| | Sbjct 44288 GATGGATAGCGACTGCAACTCTCATTAGCATGTGTTGTGGTCGTTCGACAACTTTTCCAC 44347 Query 70142 TTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGT 70201 ||| || | || ||| | |||||||||||||||| ||||| || ||||| ||| | Sbjct 44348 GTATCTTGAGCAAGTAACTTCTTTCCAGAGTTTTAAAGCCAAAGTAATTGTAATTAAAAT 44407 Query 70202 CTCTTTCGTAAATAAT 70217 |||| ||||| || || Sbjct 44408 CTCTATCGTAGATTAT 44423 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 68989 TCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT 69048 ||||||||||| ||||| ||||||||||| | |||||| || |||| |||| || | Sbjct 42698 TCACAACTTGCTTCTAAGGCACCGTAATATAGTGTTTCAAATATCTGAATATTCAGTTTC 42757 Query 69049 TGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGA 69108 || |||||| || || || |||||| | | | || || ||||| || | ||| || Sbjct 42758 TGCGCTTCTTCGCTTTCAAACGGATAACGCATCAAAAGGAACGCATCAGCAAGTCCTTGC 42817 Query 69109 ACCCCAATACC 69119 || |||||||| Sbjct 42818 ACGCCAATACC 42828 >seq6000 Length=2059021 Score = 120 bits (132), Expect = 4e-22 Identities = 227/332 (68%), Gaps = 4/332 (1%) Strand=Plus/Minus Query 69116 TACCGATAGGTCTATGTCTCTTATTTGAACTTTCAGCTTCTGGAATAGGATAATAATTAA 69175 ||||||||||||| || || | ||| || | | |||||||| || ||||||||||| | Sbjct 208024 TACCGATAGGTCTGTGCCTTTGATTGGATTTCTTTGCTTCTGGGATTGGATAATAATTGA 207965 Query 69176 TATCTATAATTTTATTAAGATTTCGGACTACTACTTTAACCACGTCCTTTAGTTTGAGAA 69235 | ||||| | |||| || |||| ||||||||| ||| | |||||| || | Sbjct 207964 TGTCTATTACGTTATCCAGGTTTCTAGTAACTACTTTAGTCACTTTCTTTAGCTTTTCGA 207905 Query 69236 AATC--AAATCGTCCATCTATAACAAACATATTCAGTGCTACAGATGCTAGATTACAAAC 69293 |||| || | || | | | ||||||||||| | || | || || | |||||| | Sbjct 207904 AATCGAAAGTTTTCGAGC--TTACAAACATATTGACGGCAATCGAAGCCAAATTACATGC 207847 Query 69294 TGCTACCTCATTAGAATTTGCATATTGTATTATCTCTGTACATAGATTACTACATTTGAT 69353 || || |||| | | | | |||||||| || ||||| || | ||||||||||| || Sbjct 207846 AGCAACTTCATCCGGACTAGAATATTGTACAATTTCTGTGCAGAAGTTACTACATTTTAT 207787 Query 69354 AGTCCCCAGATTTTGCTGATTACTCTTTTTGTTACAGGCGTCCTTGTAAAGAATAAACGG 69413 || || | |||||| ||||| || ||||| || || || | || | || Sbjct 207786 TGTTCCTATATTTTGGTGATTTGATTTACGATTACAATGATCTTTATACAACATGTAAGG 207727 Query 69414 AGTACCAGTTTCAATCTGAGATTCGATAATAG 69445 ||| |||||||| | || | | ||| ||||| Sbjct 207726 AGTTCCAGTTTCTACTTGTGCTACGAGAATAG 207695 Score = 113 bits (124), Expect = 6e-20 Identities = 208/305 (68%), Gaps = 0/305 (0%) Strand=Plus/Minus Query 69661 TTTCCTGTAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 69720 || ||||| || ||||| |||| | ||| || | |||||| | |||||||||||||| Sbjct 207150 TTACCTGTGTTCTTTTTCAGATTCAAAAAATCAAAAATATCTGCATGCCATGGTTCTAAG 207091 Query 69721 TATATCGCCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTA 69780 || || || | |||| |||| |||| || ||||| || ||| || || | ||| Sbjct 207090 TAGATGGCGAATGCTCCAGGTCTATTATCCCCACCCTGTTCAATGCATAGTGCTGAATTA 207031 Query 69781 TTATAGACTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAA 69840 || || ||||| ||||| || | | || || || ||| ||| |||| ||| Sbjct 207030 TTGTATACTCTAAGCATTGGGACTAGTCCGTTGGACACACCTAGTGTGCCAGCAATCAGT 206971 Query 69841 CTTCCTCTTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATT 69900 |||||||||| ||||| | || | ||||| || | || || |||| | Sbjct 206970 GTTCCTCTTGCCCGAATGCAATGAACATTGAGACCAATATCACCAGCTGATTTACTAACA 206911 Query 69901 AGAGCACAACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGA 69960 || |||| | ||||||||| ||||| || || ||||||||||||| |||| | ||| Sbjct 206910 AGCACACATCTTTTCAATGTATCATAAATTCCTACTATGCTATCATCAGTCATTGTCAGA 206851 Query 69961 AGAAA 69965 || || Sbjct 206850 AGGAA 206846 Score = 93.3 bits (102), Expect = 6e-14 Identities = 178/258 (69%), Gaps = 6/258 (2%) Strand=Plus/Minus Query 69963 AAAACAGCTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTG 70022 |||| | ||||||| ||| || ||||| | ||| || | ||| || ||| ||| Sbjct 206768 AAAATACCTAGACAATTGTTGTCTCATAGTACATGCAAAGAAGAGTGTTGGCAATGAGTG 206709 Query 70023 AGTGAACCATTTTTCAGA-AAGCAGATTGTATGTTTCAATAGCTGATTCTATATCCCACT 70081 || || | | ||| || ||| | ||| || ||||| |||||| || |||| | || Sbjct 206708 CGTAAAGTAATGTTCCGACAAGTA-ATTATAAGTTTCTATAGCTTCGTCGATATTCTCCT 206650 Query 70082 GATGAATTCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTAT 70141 |||| || | | || || | ||| | ||| || || |||||||| || ||| | || Sbjct 206649 GATGGATAGCAACTGCAACTCTCATTAGCATGTGTTGCGGTCGTTCGACAACTTTTTCAT 206590 Query 70142 TTATTTTCAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTA--TGAAAA 70199 ||| || | || ||| | |||||||||||||||| ||| | || ||||| ||||| Sbjct 206589 GTATCTTGAGCAAGTAACTTCTTTCCAGAGTTTTAAAGCCATAGTAATTGTAATTGAAA- 206531 Query 70200 GTCTCTTTCGTAAATAAT 70217 ||||| ||||| || || Sbjct 206530 -TCTCTGTCGTAGATTAT 206514 Score = 84.2 bits (92), Expect = 3e-11 Identities = 97/131 (74%), Gaps = 0/131 (0%) Strand=Plus/Minus Query 68989 TCACAACTTGCCTCTAATGCACCGTAATAAATTGTTTCGAAAATCTTCTTATTGAGATCT 69048 ||||||||||| ||||| ||||||||||| | |||||| || |||| |||| || | Sbjct 208225 TCACAACTTGCTTCTAAGGCACCGTAATACAGTGTTTCAAATATCTGAATATTCAGTTTC 208166 Query 69049 TGTGCTTCTAGACTATCGAATGGATAATGTAAAAGAATAAATGCATCTGCCAATCCCTGA 69108 || |||||| || || || |||||| | | | || || ||||| || | ||| || Sbjct 208165 TGCGCTTCTTCGCTTTCAAACGGATAACGCATCAAAAGGAACGCATCAGCAAGTCCTTGC 208106 Query 69109 ACCCCAATACC 69119 || |||||||| Sbjct 208105 ACGCCAATACC 208095 >seq4970 Length=98340 Score = 105 bits (116), Expect = 9e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 39878 TCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCGCC 39937 || || | ||||||||| || |||| | |||||||||||| |||| ||||| || || Sbjct 66048 TCCTTGATATATGTATCGATCAACAAAGAATACATTTCTGAGTGGACATTTTCCATAGCA 66107 Query 39938 ATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTTCC 39997 | ||| || || ||||| || | ||| || |||| ||| |||||| || || ||||| Sbjct 66108 ACCTGGAAACCATAAAAGCAGCGTGCCTCTGTAACTTGGACCTCTTGACTGAACCTTTCT 66167 Query 39998 GCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATG 40050 | | ||| || || || ||||||||| ||| || || ||||| || || || Sbjct 66168 ACAAGATTCTCGTTGACAATTCCATCAGAAGCAGCGAAGAATGCTAACACGTG 66220 Score = 89.7 bits (98), Expect = 7e-13 Identities = 152/220 (69%), Gaps = 3/220 (1%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||| ||| | |||||| |||||| || |||||||| ||||| | || | Sbjct 65743 CCTCATCTCTAGAAATGAGTTCGTTGCTAAATGTAAGGCCAGGCATGAGACCTCTTTTCT 65802 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | | |||||| || || || ||| || || || |||||||| || || ||||||| Sbjct 65803 TCAACCAAAAGATAGCGGCGAAACTACCGCTGAAAAATATGCCTTCCACCGCAGCAAATG 65862 Query 39759 CAACAAGTCTCTCTCCGTAACTTGTA---TCATTATGTATCCACTTCTGTGCCCAATCAG 39815 | || | || || | || | | | || | | |||||| ||| |||||| | || Sbjct 65863 CGACTATTCGTTCGGGGAAAGTGGCAGACTCGTGGTTTATCCAATTCAATGCCCAGTTAG 65922 Query 39816 CTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAA 39855 ||||||| || || |||| |||| || || ||||| Sbjct 65923 CTTTCTTAGCAACGCACGGCAGATTTTCGATTGCGTTAAA 65962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686800620450360