Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq4507 100 2e-16 seq5784 82.4 6e-11 >seq4507 Length=49670 Score = 100 bits (110), Expect = 2e-16 Identities = 189/271 (70%), Gaps = 14/271 (5%) Strand=Plus/Plus Query 40949 AGGAATGGATCAATTACAGTGCGTTATAGATACGATTA--AATCCGATCCCGATAGCCGA 41006 ||| || ||||||||| | ||||||||||| ||| | ||| | ||| ||| | || Sbjct 14213 AGGCATCGATCAATTAAGGAACGTTATAGATAAGATAAAGAATTC--TCCTGATGACAGA 14270 Query 41007 CGTATAATATTGTGCGCGTGGAACCCAACGGACGTACATTT----GATGGCATTGCCACC 41062 | ||||| || || ||||| ||| ||| | |||| ||||||||| || || Sbjct 14271 AGAATAATTATGACAGCATGGAATACAA---ACG-ATATTTCACAGATGGCATTACCTCC 14326 Query 41063 TTGTCATT-TGTTATGTCAGTTTTACGTTTGCAATGGTGAACTGTCATGTCAATTGTATC 41121 |||||||| | || | ||| |||||| || |||| || ||| | | |||||| | |||| Sbjct 14327 TTGTCATTGTCTTGT-TCAATTTTACATTGGCAACGGGGAATTATTCTGTCAACTTTATC 14385 Query 41122 AAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATAGCGAGTTATGCTCTGCTCA 41181 | ||| | || ||||| || || || || ||||| ||||| ||| ||||| | | Sbjct 14386 AGAGAAGCGCCGATATGGGTCTTGGTGTACCTTTTAATATAGCATCCTATTCTCTGTTAA 14445 Query 41182 CGTATATGATTGCACACGTTACCAATTTAAA 41212 | || ||| | || || | || |||||||| Sbjct 14446 CTTACATGCTAGCTCATATCACAAATTTAAA 14476 Score = 87.8 bits (96), Expect = 1e-12 Identities = 177/257 (69%), Gaps = 12/257 (5%) Strand=Plus/Plus Query 40692 TTTCCGTTGCTAACTACaaaaaaaaTGTTTTGGAAAGGCATTGCAGAAGAACTGTTATGG 40751 ||||| || || || |||||| | ||||||||||||| | | || || ||| ||||| Sbjct 13879 TTTCCATTACTGACCACAAAACGAGTGTTTTGGAAAGGAGTAGTCGAGGAGCTGCTATGG 13938 Query 40752 TTTATCAAAGGTTGTACTAATGCTAAGAAATTATCA--GAAAGAGGAGTGCACATTTGGA 40809 ||||| ||||| | || || || || || | || ||||| ||| | || || ||| Sbjct 13939 TTTATAAAAGGATCAACGAACGCGAAAGAACTCTCGTCGAAAG-GGATT-CATATATGGG 13996 Query 40810 ATGCGCACAGTTCTAAAACATATTTGTCTAG---CATA-GGATTACAAGATAGGGATGAA 40865 ||| |||| || || | ||||| || | ||||| | ||||| || ||| Sbjct 13997 ATGGAAACAGCTC----ACGGGAATTTCTAGATTCACATGGATTTAACGATAGAGAAGAA 14052 Query 40866 GGTGATCTTGGTCCTGTTTATGGATTTCAGTCGCGACATTTTGGAGCAAAATATGACACT 40925 || || | || ||||| || |||||||| | | | || | ||||||||||||| | | Sbjct 14053 GGAGACTTAGGACCTGTCTACGGATTTCAATGGAGGCACTATGGAGCAAAATATCAAGAT 14112 Query 40926 ATGTACTCTGATTATAC 40942 ||| | | |||||||| Sbjct 14113 ATGCGCACAGATTATAC 14129 >seq5784 Length=1784930 Score = 82.4 bits (90), Expect = 6e-11 Identities = 144/210 (69%), Gaps = 6/210 (3%) Strand=Plus/Plus Query 19549 TTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAGG------TTCT 19602 |||||||| || || | || ||| | || || || |||||| ||||| | || Sbjct 147726 TTGCACATAATCATTTTCGACGAAATAGATGCTATTTGTAAGTCTAGAGGAAGTGTTGCT 147785 Query 19603 GGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTT 19662 ||| | |||||||||||||||||||| ||||| | || | || | || ||||| Sbjct 147786 GGTAATACAGGAGTACATGACACTGTTGTAAATCAGTTACTTGCGAAGATTGATGGTGTA 147845 Query 19663 AACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGC 19722 | ||| | ||||||||| | |||||||| ||||| || ||| || | || || Sbjct 147846 GAGCAATTAAATAATATTCTCGTTATTGGTATGACCAACAGAAGAGATATGATCGATGAA 147905 Query 19723 GCCTTATTACGACCCGGTCGGTTGGAAATA 19752 || ||| | ||||| ||| | || ||| || Sbjct 147906 GCTTTACTGCGACCTGGTAGATTAGAAGTA 147935 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397394970506995