Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq7268 107 2e-18 seq4730 91.5 1e-13 >seq7268 Length=409911 Score = 107 bits (118), Expect = 2e-18 Identities = 146/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| || ||||| ||||| || || | ||| || ||| | || |||||||| Sbjct 284595 ATGGAGAGTGGATTCCTTTTGAATATTGTAGTCTGAAAGCGTGCGTCCATCTTCAAGCTG 284536 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 |||||||||||| || | | |||||| || | ||| | || |||||||| |||||| Sbjct 284535 TTTGCCCGCAAAGATTAATCTCTGCTGATCTGGGGGAATGCCTTCTTTGTCTTGGATTTT 284476 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 | || | || | | |||||| | ||| || |||| || ||| |||| || || Sbjct 284475 CGCCTTTACATTCTCAATAGTATCGGAGGCCTCAACTTCCAATGTAATAGTTTTACCGGT 284416 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || || |||||||| |||||||| Sbjct 284415 GAGAGTCTTAACAAAAATTTGCAT 284392 Score = 98.7 bits (108), Expect = 9e-16 Identities = 170/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || |||||||| | | | || | ||| || ||| || || Sbjct 282811 TAACGAAAATTTG--CATGCCTCCTCGAAGTCTCAGTACAAGATGGAGAGTGGATTCCTT 282754 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||| |||||||| || | |||||| || | || ||||||||||| || || || || | Sbjct 282753 TTGAATATTATAGTCAGAAAGTGTGCGGCCATCTTCAAGCTGTTTACCAGCGAAGATCAA 282694 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 | ||||||||| | ||| | | |||||||| ||||| ||||| | | | Sbjct 282693 CCTCTGCTGGTCCGGGGGAATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCAAT 282634 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 |||||| | ||| || |||| ||| || |||| || || || || |||||||| || Sbjct 282633 AGTATCGGATGCCTCAACTTCCAGCGTTATTGTTTTACCTGTAAGGGTCTTAACAAAAAT 282574 Query 39279 TTGCAT 39284 |||||| Sbjct 282573 TTGCAT 282568 Score = 98.7 bits (108), Expect = 9e-16 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| ||||| ||||||||||| | ||| || || | || ||||||||||| || || || Sbjct 286179 CTCCTTTTGAATATTATAATCTGAAAGAGTGCGGCCATCTTCAAGCTGTTTACCGGCGAA 286120 Query 39153 TATAAGACGCTGCTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCG 39211 || | ||||||||||| |||||| | |||||||| ||| ||| ||| || | Sbjct 286119 GATCAACCGCTGCTGGTCTGGTGGG-ATTCTCTCTTTATCCTGGATCTTCGCCTTCACAT 286061 Query 39212 TCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAA 39271 || | | || || | ||| || |||| || ||| |||| || ||||| || |||| Sbjct 286060 TCTCAATAGTGTCAGAGGCCTCTACTTCCAATGTAATAGTTTTACCAGTCAGAGTCTTAA 286001 Query 39272 CAAAGATTTGCAT 39284 | || |||||||| Sbjct 286000 CGAAAATTTGCAT 285988 Score = 95.1 bits (104), Expect = 1e-14 Identities = 169/246 (69%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || |||||||| | || | || | ||| || || |||||| Sbjct 283039 TAACGAAAATTTG--CATGCCTCCTCGAAGCCGCAGTACAAGATGCAGTGTAGACTCTTT 282982 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 || ||||| ||||| | ||| |||||| | || |||||||||||||| || || || | Sbjct 282981 CTGAATATTGTAATCAGAAAGCGTTCGTCCATCTTCAAGCTGTTTGCCAGCGAAGATCAA 282922 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 | |||||| || | || | | |||||||| |||||| || | || | | Sbjct 282921 CCTCTGCTGATCAGGTGGAATACCTTCTTTGTCTTGAATTTTCGCCTTCACGTTCTCTAT 282862 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 ||| || || || || |||| || || ||||||| || || || ||||| || || Sbjct 282861 CGTGTCAGACGCTTCAACCTCCAGAGTTATTGTTTTTCCTGTAAGGGTCTTAACGAAAAT 282802 Query 39279 TTGCAT 39284 |||||| Sbjct 282801 TTGCAT 282796 Score = 93.3 bits (102), Expect = 4e-14 Identities = 143/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 ||| || ||| |||||||| ||||| || || | |||||| || | || |||||||| Sbjct 283911 ATGAAGAGTGGATTCTTTTTGAATATTGTAGTCAGAAAGTGTGCGGCCATCTTCAAGCTG 283852 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || || || || || | | ||||||||| | || | | ||||||||| ||||| Sbjct 283851 CTTACCGGCGAAGATCAACCTCTGCTGGTCTGGAGGAATACCCTCTTTGTCTTGAATTTT 283792 Query 39201 CTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGT 39260 | || | || | | || ||| | ||| || |||| || ||| ||||||| || Sbjct 283791 CGCCTTTACATTCTCAATTGTGTCGGAGGCCTCAACTTCCAATGTAATAGTTTTTCCAGT 283732 Query 39261 CAGCGTTTTAACAAAGATTTGCAT 39284 || ||||||||||| |||||||| Sbjct 283731 GAGGGTTTTAACAAAAATTTGCAT 283708 Score = 89.7 bits (98), Expect = 4e-13 Identities = 168/246 (68%), Gaps = 2/246 (1%) Strand=Plus/Minus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || |||||| | || || || || | || | || ||| || Sbjct 283495 TAACAAAAATTTG--CATGCCTCCACGTAGACGCAATACAAGGTGCAATGTAGACTCCTT 283438 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 ||| ||||| || || | |||||| || | || || ||||||||||| || || || | Sbjct 283437 TTGAATATTGTAGTCAGAAAGTGTACGGCCATCTTCGAGCTGTTTGCCTGCGAAGATCAA 283378 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 | ||| ||||| | ||| | | |||||||| ||||| ||||| | | | Sbjct 283377 CCTCTGTTGGTCTGGGGGAATACCTTCTTTGTCTTGAATTTTAGCTTTGACATTTTCTAT 283318 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 |||||| | ||| || |||| ||| || |||| || || || || |||||||| || Sbjct 283317 AGTATCGGATGCCTCAACTTCCAGCGTTATTGTTTTACCTGTAAGGGTCTTAACAAAAAT 283258 Query 39279 TTGCAT 39284 |||||| Sbjct 283257 TTGCAT 283252 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39093 CTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAA 39152 ||| || || |||||||| || | |||||| || | || ||||||||||| || || || Sbjct 284355 CTCCTTCTGAATATTATAGTCAGAAAGTGTGCGGCCATCTTCAAGCTGTTTACCAGCGAA 284296 Query 39153 TATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGT 39212 || | | ||||||||| | ||| | | |||||||| ||||| ||||| | Sbjct 284295 GATCAACCTCTGCTGGTCCGGGGGAATACCTTCTTTGTCTTGAATTTTAGCTTTGACATT 284236 Query 39213 CGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | |||||| | ||| || |||| ||| || |||| || || || || ||||| Sbjct 284235 TTCAATAGTATCGGATGCCTCAACTTCCAGCGTTATTGTTTTACCTGTAAGAGTCTTAAC 284176 Query 39273 AAAGATTTGCAT 39284 || |||||||| Sbjct 284175 GAAAATTTGCAT 284164 Score = 84.2 bits (92), Expect = 2e-11 Identities = 169/247 (68%), Gaps = 4/247 (2%) Strand=Plus/Minus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || || || | | ||| | || | ||| || ||| || || Sbjct 285091 TAACGAAAATTTG--CATACCACCGCGGAGGCGAAGTACAAGATGAAGAGTGGATTCCTT 285034 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 || ||||| || || | |||||| || | || ||||||||||| || || || || | Sbjct 285033 CTGAATATTGTAGTCAGAAAGTGTGCGACCATCTTCAAGCTGTTTACCGGCGAAGATCAA 284974 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTG-TTTGAGCGTCGCCA 39217 | ||||||||| | || | | |||||||| | ||| ||| || || | || | | Sbjct 284973 CCTCTGCTGGTCTGGAGGAATACCCTCTTTGT-CTTGAATTTTTGCCTTTACATTCTCAA 284915 Query 39218 CCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGA 39277 || || | ||| || |||| || ||| ||||||| || || ||||||||||| | Sbjct 284914 TTGTGTCAGAGGCCTCTACTTCCAATGTAATAGTTTTTCCAGTAAGTGTTTTAACAAAAA 284855 Query 39278 TTTGCAT 39284 ||||||| Sbjct 284854 TTTGCAT 284848 >seq4730 Length=3448589 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || ||||| || || ||| ||| || ||||||||||| |||| |||||||| | || Sbjct 2520126 CGCAAGACCAAGTGAAGAGTGGACTCCTTCTGTATATTATAGTCGGAAAGTGTTCTTCCG 2520185 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | ||||| || ||||| || | ||||||||| || | || | | || || Sbjct 2520186 TCTTCTAATTGTTTACCAGCAAAGATCAAACGCTGCTGATCTGGAGGAATTCCTTCCTTA 2520245 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || || || ||| | || | | |||||| | || || |||| ||||| Sbjct 2520246 TCTTGAATCTTGGCTTTCACGTTCTCTATCGTATCTGAAGCTTCAACCTCCAGGGTGATG 2520305 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || || ||||| || ||||||||||| Sbjct 2520306 GTCTTTCCTGTGAGTGTTTTCACGAAGATTTGCAT 2520340 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 39070 CGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCG 39129 || || |||||||| || || ||| || ||||||||||| |||| ||| |||| | Sbjct 2520354 CGCAAGACCAAATGCAGAGTAGACTCCTTCTGTATATTATAGTCGGAAAGGGTTCTACCA 2520413 Query 39130 TCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTG 39189 || || | |||||| || ||||| || | |||||||| |||| || | | || || Sbjct 2520414 TCTTCCAACTGTTTACCAGCAAAGATCAATCGCTGCTGATCGGGAGGAATACCTTCCTTA 2520473 Query 39190 TCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATA 39249 || || || ||| | || | | |||||| | || || |||| ||||| Sbjct 2520474 TCTTGAATCTTGGCTTTCACGTTCTCTATCGTATCTGAAGCTTCAACTTCCAGGGTGATG 2520533 Query 39250 CTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | ||||| || |||||||| |||||||| ||||| Sbjct 2520534 GTCTTTCCTGTAAGCGTTTTGACAAAGATCTGCAT 2520568 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429479643138887