Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_031033.1 Length=217124 Score E Sequences producing significant alignments: (Bits) Value seq11430 152 7e-32 seq6000 147 3e-30 seq4970 84.2 3e-11 >seq11430 Length=555723 Score = 152 bits (168), Expect = 7e-32 Identities = 249/354 (70%), Gaps = 6/354 (2%) Strand=Plus/Plus Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 |||| |||||||| || || | |||||| |||| |||||||| || ||||||||||| | Sbjct 42899 TACCGATAGGTCTGTGCCTTTGATTGGATCTTTTTGCTTCTGGGATTGGATAATAATTGA 42958 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 |||| || | ||||| || |||||| |||||||||| ||| ||||| || || | Sbjct 42959 TGTCGATTACGTTATTCAGGTTTCTAGTAACTACTTTAGTCACTTCCTTCAGCTTTTCGA 43018 Query 77644 AATC--AAATCTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAAC 77701 |||| || | ||| | | | || ||||| || | || || || || | ||||| || Sbjct 43019 AATCGAAAGTTTTCGAGC--TTACGAACATATTGACGGCAATCGAAGCCAAGTTACATAC 43076 Query 77702 TGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGAT 77761 || || |||| | | | |||||||| || ||||| || | ||||||||||| || Sbjct 43077 AGCAACTTCATCCGGACTAGAATATTGTACGATTTCGGTGCACAAGTTACTACATTTTAT 43136 Query 77762 AGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGC-ATGAGTCCTTATAAAGAATAAACG 77820 || || | |||||| || || || ||| | |||| || ||||| | || | | Sbjct 43137 TGTTCCTATATTTTGGTGATTTGATTTACGATTACAATGA-TCTTTATACAACATGTAAG 43195 Query 77821 GAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 77874 |||| || ||||| | |||||| ||| ||||| |||| | |||| |||| Sbjct 43196 GAGTTCCAGTTTCTACTTGTGATACGAGAATAGCAGTCCATAATTCTCTGGCTT 43249 Score = 150 bits (166), Expect = 2e-31 Identities = 218/308 (71%), Gaps = 0/308 (0%) Strand=Plus/Plus Query 77031 TGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTC 77090 || || |||||| || || ||||| | ||| || ||||| || | ||| | | || Sbjct 42045 TGGATAGAACCATTATTTGCTATAACTTCATTTTTCATATCTTCGTCCCAGAGATCTCTT 42104 Query 77091 TCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTA 77150 || |||||| ||| || | ||||||||| || | ||| |||||||| || | ||||| Sbjct 42105 TCAGTTAAATCTCGTAGCAAATGAGGATTCACGACTTGGAATTCTCCGGAGAGTACTCGC 42164 Query 77151 CGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCA 77210 | || || ||||| || || || || | || ||||||||||| |||||||| ||| Sbjct 42165 CTTACATATATGTTACTAGTGTAAGGCTCGATCGACTCATTGTTTCCTAAAATTTGCGCA 42224 Query 77211 GTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATT 77270 || ||||| || |||||||| || | ||||| | |||||| | |||||| | | ||| Sbjct 42225 GTCGAAGCTGTCGGCATAGGCGCGATCAATAGAGAATTTCTAACTCCATGTTTCTTTATT 42284 Query 77271 TTATCTTTTAGATATTTCCAATCCCAAAGATCTGAAGGTACAACATCCCAAAGATCGTAT 77330 || ||||| || |||||||||| | || | || ||| | ||| | ||| ||| Sbjct 42285 TTTTCTTTCAGCGCACTCCAATCCCACAAGTCAGTCGGAGTAACGTTCCACATATCATAT 42344 Query 77331 TGTAGAAT 77338 ||||| || Sbjct 42345 TGTAGGAT 42352 Score = 98.7 bits (108), Expect = 1e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 78069 TTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 78128 || ||||| |||||||| |||| | ||| || | |||||| | |||||||||||||| Sbjct 43778 TTACCTGTGTTCTTTTTCAGATTCAAAAAGTCAAAAATATCTGCATGCCATGGTTCTAAG 43837 Query 78129 TATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTA 78188 || || || | ||||||||| ||||| || || ||||| | ||||| || || ||| Sbjct 43838 TAGATAGCGAATGCTCCAGGTCTCTTATTCCCACCTTGATCAACATATCGTGCTGTATTA 43897 Query 78189 TTATAAACTCTCAACATTGGAA 78210 || || ||||| | ||||||| Sbjct 43898 TTGTATACTCTGAGAATTGGAA 43919 Score = 95.1 bits (104), Expect = 2e-14 Identities = 176/256 (69%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 78371 AAAACAGCTAGACATTTGATGATGAACAGTTCCTGCATTAAATAATGTCGGAGATGCATG 78430 |||| | ||||||| ||| || | ||| | ||| || | |||||| |||||||| Sbjct 44169 AAAATACCTAGACAATTGTTGTCTCATAGTACACGCAAAGAAGAGTGTCGGCGATGCATG 44228 Query 78431 CGTAAACCATTTTTCAGA-AAGTAGATTGTATGTTTCAATAGCTGATTCTATGTCCCATT 78489 |||||| | ||| || ||||| ||| || ||||| |||||| || || | | | Sbjct 44229 CGTAAAGTAACGTTCCGACAAGTA-ATTATAAGTTTCTATAGCTTTGTCGATATTCTCCT 44287 Query 78490 GATGAATTCCTACCGCTACACGCATCAACATATGCTGAGGTCTTTCAACCGTCTTATTAT 78549 |||| || | || || || | ||| | ||| || || |||| ||| || || | Sbjct 44288 GATGGATAGCGACTGCAACTCTCATTAGCATGTGTTGTGGTCGTTCGACAACTTTTCCAC 44347 Query 78550 TTATTTTCAACAAGTATGATTTTTCCAAAGTTTTAAAACCAAAATAGTTGTATGAAAAGT 78609 ||| || | |||||| | |||||| ||||||||| ||||| || ||||| ||| | Sbjct 44348 GTATCTTGAGCAAGTAACTTCTTTCCAGAGTTTTAAAGCCAAAGTAATTGTAATTAAAAT 44407 Query 78610 CTCTCTCGTAAATAAT 78625 |||| ||||| || || Sbjct 44408 CTCTATCGTAGATTAT 44423 >seq6000 Length=2059021 Score = 147 bits (162), Expect = 3e-30 Identities = 192/266 (72%), Gaps = 0/266 (0%) Strand=Plus/Minus Query 77031 TGAATGGAACCACCATCTGATATAATTGTATTCTTTATATCATCATTCCACAATTTCCTC 77090 || || |||||| || || ||||| | ||| || ||||| |||| ||| | | || Sbjct 208894 TGGATAGAACCATTATTTGCTATAACTTCATTTTTCATATCTTCATCCCAGAGATCTCTT 208835 Query 77091 TCTGTTAAAACTCTAAGGAGATGAGGATTAACTATTTGAAATTCTCCAGACAATACTCTA 77150 || |||||| ||| || | ||||||||| || | || || |||||| || ||||| Sbjct 208834 TCAGTTAAATCTCGTAGCAAATGAGGATTCACGACTTCAATTTCTCCGGAGGGTACTCGC 208775 Query 77151 CGAGTGTAAATATTACTGGTATATGGTTCCACAGATTCATTGTTTCCCAAAATTTGAGCA 77210 | || | ||||| || || ||||| || || ||||||||||| |||||||| ||| Sbjct 208774 CTTACATATGTGTTACTAGTGTAAGGTTCGACCGACTCATTGTTTCCTAAAATTTGCGCA 208715 Query 77211 GTAGAAGCAGTTGGCATAGGTGCCACCAATAAACTATTTCTGAGACCATGTGTTCTGATT 77270 || |||||||| |||||||| || | ||||| | |||||| | |||||| | | ||| Sbjct 208714 GTCGAAGCAGTCGGCATAGGCGCGATCAATAGAGAATTTCTAACTCCATGTTTCTTTATT 208655 Query 77271 TTATCTTTTAGATATTTCCAATCCCA 77296 || ||||| || |||||||||| Sbjct 208654 TTTTCTTTCAGCGCACTCCAATCCCA 208629 Score = 143 bits (158), Expect = 4e-29 Identities = 247/354 (70%), Gaps = 6/354 (2%) Strand=Plus/Minus Query 77524 TACCAATAGGTCTATGTCTCTTATTGGAAATTTTAGCTTCTGGAATAGGATAATAATTAA 77583 |||| |||||||| || || | |||||| | || |||||||| || ||||||||||| | Sbjct 208024 TACCGATAGGTCTGTGCCTTTGATTGGATTTCTTTGCTTCTGGGATTGGATAATAATTGA 207965 Query 77584 TGTCTATAATTTTATTGAGATTTCTAACAACTACTTTAACCACGTCCTTTAGTTTAAGAA 77643 ||||||| | |||| || |||||| |||||||||| ||| | |||||| || | Sbjct 207964 TGTCTATTACGTTATCCAGGTTTCTAGTAACTACTTTAGTCACTTTCTTTAGCTTTTCGA 207905 Query 77644 AATC--AAATCTTCCATCTATAACAAACATGTTCAAAGCTATAGATGCTAGATTACAAAC 77701 |||| || | ||| | | | |||||||| || | || || || || | |||||| | Sbjct 207904 AATCGAAAGTTTTCGAGC--TTACAAACATATTGACGGCAATCGAAGCCAAATTACATGC 207847 Query 77702 TGCTACCTCATTAGCGTTGGCATATTGTATTATCTCGGTACATAGATTACTACATTTGAT 77761 || || |||| | | | |||||||| || || || || | ||||||||||| || Sbjct 207846 AGCAACTTCATCCGGACTAGAATATTGTACAATTTCTGTGCAGAAGTTACTACATTTTAT 207787 Query 77762 AGTGCCCAGATTTTGTTGGTTGCTCTTTTTATTGC-ATGAGTCCTTATAAAGAATAAACG 77820 || || | |||||| || || || ||| | |||| || ||||| | || | | Sbjct 207786 TGTTCCTATATTTTGGTGATTTGATTTACGATTACAATGA-TCTTTATACAACATGTAAG 207728 Query 77821 GAGTCCCGGTTTCAATCTGTGATTCGATAATAGATTTCCAGACGACTCTAGCTT 77874 |||| || ||||| | |||| | ||| ||||| |||| | |||| |||| Sbjct 207727 GAGTTCCAGTTTCTACTTGTGCTACGAGAATAGCAGTCCATAATTCTCTCGCTT 207674 Score = 89.7 bits (98), Expect = 7e-13 Identities = 117/162 (72%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 77913 GTATATAGCCGTTCAAATTCATCTCCCCAAACATCATCCAATCCAGGGCATTCATTTGGG 77972 ||||| || |||||||||||| ||||| |||||| |||| ||||| | |||| ||| Sbjct 207385 GTATAGAGAGCTTCAAATTCATCGCCCCACACATCAGCCAAACCAGGAGAATCATGGGGG 207326 Query 77973 CACATCAATGACCAGTCACCATCTTCCTTAACTCGTTTCATAAAGAGATCAGGTATCCAT 78032 ||||| || ||| | ||||| || || | |||||| || |||||||| |||||| Sbjct 207325 CACATTAAACTCCAAACTCCATCATCAAATACCCTTTTCATGAACAGATCAGGAATCCAT 207266 Query 78033 AGAGCAATAAATAGATCTCGGGTTCTATGTTCTTCATTTCCT 78074 | |||| || | ||||| | ||| ||| || || ||| Sbjct 207265 AAAGCATAGAACAATTCTCGTGCTCTGGTTTCCTCTTTACCT 207224 Score = 86.0 bits (94), Expect = 9e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 78069 TTTCCTGTATTCTTTTTAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGA 78128 || ||||| |||||||| |||| | ||| || | |||||| | |||||||||||||| Sbjct 207150 TTACCTGTGTTCTTTTTCAGATTCAAAAAATCAAAAATATCTGCATGCCATGGTTCTAAG 207091 Query 78129 TATATTGCCATAACTCCAGGTCGTTTATTACCTCCCTGATCTATATATCTGGCGGTGTTA 78188 || || || | ||||||||| |||| || ||||| || || || || | ||| Sbjct 207090 TAGATGGCGAATGCTCCAGGTCTATTATCCCCACCCTGTTCAATGCATAGTGCTGAATTA 207031 Query 78189 TTATAAACTCTCAACATTGGAATAATACCGTTAGATGTTCCATTTGTTCCAGAAATATAA 78248 || || ||||| | |||||| | | ||||| || || ||| |||| ||| Sbjct 207030 TTGTATACTCTAAGCATTGGGACTAGTCCGTTGGACACACCTAGTGTGCCAGCAATCAGT 206971 Query 78249 CTTCCACTTGCGCGAAT 78265 |||| ||||| ||||| Sbjct 206970 GTTCCTCTTGCCCGAAT 206954 >seq4970 Length=98340 Score = 84.2 bits (92), Expect = 3e-11 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 47849 TTTTTGATATTCACCCACACGTTTCTCGAAAAAATTAGTTTTGCCTTCCAATGATATATT 47908 ||| |||||||| || || |||||||||||||| ||||| || ||||| || |||| Sbjct 65209 TTTCTGATATTCTCCAACCTTCTTCTCGAAAAAATTCGTTTTACCCTCCAAGGAAATATG 65268 Query 47909 TTCCATAAAATCAAATGGATT 47929 ||||||||| ||||||||||| Sbjct 65269 TTCCATAAAGTCAAATGGATT 65289 Score = 84.2 bits (92), Expect = 3e-11 Identities = 154/225 (68%), Gaps = 3/225 (1%) Strand=Plus/Plus Query 48165 TCATCTCTACTAATTAATTCGTTAGAAAATGTGAGACCGGGCATTAGTCCACGTTTTTTG 48224 ||||||||| ||| | |||||| |||||| || || ||||| || || | ||| || Sbjct 65745 TCATCTCTAGAAATGAGTTCGTTGCTAAATGTAAGGCCAGGCATGAGACCTCTTTTCTTC 65804 Query 48225 AGCCAAAATATTGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACGGCCGCAAATGCG 48284 | |||||| || || |||||| || || ||||||||||| || || ||||||||| Sbjct 65805 AACCAAAAGATAGCGGCGAAACTACCGCTGAAAAATATGCCTTCCACCGCAGCAAATGCG 65864 Query 48285 GTAAGTCTCTCTCCGTAACTGGC---TTCGTTGTGTATCCACCGTTGTGCCCAATCAGCC 48341 | || || | || |||| |||| || |||||| |||||| | ||| Sbjct 65865 ACTATTCGTTCGGGGAAAGTGGCAGACTCGTGGTTTATCCAATTCAATGCCCAGTTAGCT 65924 Query 48342 TTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAG 48386 ||||| || || |||| |||| || || ||||| | |||| Sbjct 65925 TTCTTAGCAACGCACGGCAGATTTTCGATTGCGTTAAATAAAAAG 65969 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694559398347360