Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq4730 105 6e-18 seq7268 95.1 1e-14 >seq4730 Length=3448589 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||| || |||||||||||| | || || || ||||| ||| ||||| ||| | Sbjct 2520569 AATGCAGATCTTTGTCAAAACGCTTACAGGAAAGACCATCACCCTGGAAGTTGAAGCTTC 2520510 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | | | | || ||| || ||| || || ||||| |||| |||||| Sbjct 2520509 AGATACGATAGAGAACGTGAAAGCCAAGATTCAAGATAAGGAAGGTATTCCTCCCGATCA 2520450 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || | | || | ||| || ||||| ||||||||| || ||| | |||| ||||| Sbjct 2520449 GCAGCGATTGATCTTTGCTGGTAAACAGTTGGAAGATGGTAGAACCCTTTCCGACTATAA 2520390 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||||| || || ||||| || ||||| || ||||| || |||||||| Sbjct 2520389 TATACAGAAGGAGTCTACTCTGCATTTGGTCTTGCGACTTCGCGGTGG 2520342 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 111099 AATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAG 111158 |||||| || ||||||||||| |||| || || ||||| ||| ||||| ||| | Sbjct 2521025 AATGCAGATCTTTGTCAAAACTCTGACAGGGAAGACCATCACCCTGGAAGTTGAAGCTTC 2520966 Query 111159 CGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCA 111218 ||| | | | | || ||| || ||| || || ||||| |||| ||||| Sbjct 2520965 AGATACGATAGAGAACGTGAAAGCCAAGATTCAAGATAAGGAAGGAATTCCACCAGATCA 2520906 Query 111219 ACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAA 111278 || | | || | ||| || |||||||| |||||| || |||| | |||| ||||| Sbjct 2520905 GCAGCGTTTGATCTTTGCTGGTAAACAATTAGAAGATGGTAGAACTCTTTCCGACTATAA 2520846 Query 111279 TATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 |||||| || || ||||| || ||||| || ||||| || ||||| || Sbjct 2520845 TATACAGAAGGAGTCTACTCTGCATTTGGTCTTGCGACTTCGCGGAGG 2520798 >seq7268 Length=409911 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| || || | ||||| ||||| ||||| ||||| || || | Sbjct 284392 ATGCAAATTTTTGTTAAGACTCTCACCGGTAAAACTATTACATTGGAAGTTGAGGCCTCC 284451 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | ||||| ||||| |||||||||||| ||||| ||||| Sbjct 284452 GATACTATTGAGAATGTAAAGGCGAAAATCCAAGACAAAGAAGGCATTCCCCCAGATCAG 284511 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || || | || | |||||||||||| | |||||| || | | || || ||| Sbjct 284512 CAGAGATTAATCTTTGCGGGCAAACAGCTTGAAGATGGACGCACGCTTTCAGACTACAAT 284571 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| ||||| || || ||| | || | || || || ||||| Sbjct 284572 ATTCAAAAGGAATCCACTCTCCATCTTGTACTTCGCCTCCGTGGTGG 284618 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/231 (69%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| || || | || || ||||| || || ||||| ||| || | Sbjct 286672 ATGCAAATTTTTGTAAAGACCCTCACGGGGAAAACAATAACGCTGGAAGTTGAAGCCTCC 286731 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || ||| | || || |||||| ||||||||||| ||||| ||||| Sbjct 286732 GATACTATTGAGAATGTCAAGGCTAAAATTCAAGACAAAGAAGGTATTCCCCCAGATCAG 286791 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 || || | || | || || ||||| | |||||| | | ||| | | || || | Sbjct 286792 CAGAGATTGATCTTCGCCGGTAAACAGCTCGAAGATGGCCGCACACTTT--CTGACTACA 286849 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 |||| ||||||||||| || || ||| | || ||||| || || || |||| Sbjct 286850 ATATTCAAAAAGAATCCACCCTCCATCTTGTATTGCGACTCCGTGGAGGCA 286900 Score = 82.4 bits (90), Expect = 6e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||||||||| || || | || || ||||| || || ||||| || | | Sbjct 283252 ATGCAAATTTTTGTTAAGACCCTTACAGGTAAAACAATAACGCTGGAAGTTGAGGCATCC 283311 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| || | | | || ||| |||||| ||||||||||| ||||| || ||| Sbjct 283312 GATACTATAGAAAATGTCAAAGCTAAAATTCAAGACAAAGAAGGTATTCCCCCAGACCAA 283371 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGAT--TCTAAAACTATGGCCGATTATA 111277 || ||| | || | || |||||||| | |||||| | | ||| | | || || | Sbjct 283372 CAGAGGTTGATCTTCGCAGGCAAACAGCTCGAAGATGGCCGTACACTTT--CTGACTACA 283429 Query 111278 ATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGGCA 111328 |||| ||||| || |||||| | || | || |||||||| || || |||| Sbjct 283430 ATATTCAAAAGGAGTCTACATTGCACCTTGTATTGCGTCTACGTGGAGGCA 283480 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421746430758424