Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasioglossum_20albipes_20[genbank_20GCA_5F000346575.1_202013-10-08] 12,599 sequences; 336,521,443 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq7268 127 2e-24 seq4277 91.5 1e-13 >seq7268 Length=409911 Score = 127 bits (140), Expect = 2e-24 Identities = 167/229 (73%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || || || | || |||||||| || |||||||||||| |||||||| || Sbjct 284390 CCACCACGGAGGCGAAGTACAAGATGCAGTGTAGACTCCTTCTGAATATTATAGTCAGAA 284331 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||| || || ||||| |||| | ||| ||||||| |||| Sbjct 284330 AGTGTGCGGCCATCTTCAAGCTGTTTACCAGCGAAGATCAACCTCTGCTGGTCCGGGGGA 284271 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | || |||| | ||| |||| |||| || | | ||| ||| | ||| || Sbjct 284270 ATACCTTCTTTGT-CTTGAATTTTAGCTTTGACATTTTCAATAGTATCGGATGCCTCAAC 284212 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| |||||| |||||||| || || ||||| |||||||| |||||| Sbjct 284211 TTCCAGCGTTATTGTTTTACCTGTAAGAGTCTTAACGAAAATTTGCATG 284163 Score = 116 bits (128), Expect = 3e-21 Identities = 169/234 (72%), Gaps = 10/234 (4%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| ||||| ||||||| || |||||||| || ||||||||||| || |||||||| Sbjct 283707 GCCTCCGCGAAGACGTAGTACAAGATGCAGTGTAGATTCCTTCTGAATATTGTAGTCGGA 283648 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 || ||| | | || || |||||||| |||||||| |||| | |||||| || | || Sbjct 283647 AAGTGTGTGGCCATCTTCAAGCTGCTTCCCGGCGAAGATCAATCTCTGTTGTTCTGGTGG 283588 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACG-ACACA---GTGTCGCTCGAC 41809 | | ||| || ||| ||| |||||| ||| |||| | || || || | | Sbjct 283587 GATTCCCTCTTTATCC-TGAATTTTTGACTT----GACGTTCTCAATTGTATCAGAGGCC 283533 Query 41810 TCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 || || |||| |||||| ||||| || || || ||||| || ||||| |||||| Sbjct 283532 TCTACTTCCAACGTTATGGTTTTTCCGGTAAGGGTCTTAACAAAAATTTGCATG 283479 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| ||||| | || ||||| || ||| ||||||||||| || || ||||| Sbjct 285986 CCACCGCGGAGACGAAGTACAAGATGAAGAGTGGATTCCTTCTGAATATTGTAATCGGAA 285927 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||| || || ||||| || | | ||| ||| | ||| Sbjct 285926 AGTGTGCGACCATCTTCAAGCTGTTTTCCCGCGAAGATTAATCTCTGCTGGATTGGGGGG 285867 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGACACAGTGTCGCTCGACTCCACC 41815 | | |||||| || |||||| ||| | | | |||||| || ||| ||| Sbjct 285866 ATACCCTCCTTATCTTGGATTTTCGCCTTTACGTTCTCAATTGTGTCGGACGCCTCAACC 285807 Query 41816 TCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||| ||||| ||||| || || || ||||| |||||||| ||||| Sbjct 285806 TCCAGAGTTATTGTTTTTCCAGTAAGGGTCTTGACGAAAATTTGCAT 285760 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || ||||| || || | || ||||| || ||| ||||||||||| || ||||| || Sbjct 285074 CCACCGCGGAGGCGAAGTACAAGATGAAGAGTGGATTCCTTCTGAATATTGTAGTCAGAA 285015 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 || ||||| | || || ||||| || |||||||| |||| | ||| ||||| | ||| Sbjct 285014 AGTGTGCGACCATCTTCAAGCTGTTTACCGGCGAAGATCAACCTCTGCTGGTCTGGAGGA 284955 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTG-CTTCAACGACGACACAGTGTCGCTCGACTCCAC 41814 | | ||| |||| | ||| |||||| ||| | | | ||||| | ||| || Sbjct 284954 ATACCCTCTTTGT-CTTGAATTTTTGCCTTTACATTCTCAATTGTGTCAGAGGCCTCTAC 284896 Query 41815 CTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCATG 41863 |||| || || ||||| || || || || || || ||||| |||||| Sbjct 284895 TTCCAATGTAATAGTTTTTCCAGTAAGTGTTTTAACAAAAATTTGCATG 284847 >seq4277 Length=1076248 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| || || || |||||||||||||| | || || | || || |||||||| || Sbjct 1004400 TTCTGGATATTGTAATCGGAGAGGGTGCGACCATCTTCTAATTGTTTTCCGGCGAAAATG 1004341 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794 || || || ||||| | ||||| | ||||||||| ||| || ||||| Sbjct 1004340 AGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCG 1004281 Query 41795 ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854 | || || || ||| ||||| | || || ||||||||||| || ||||| ||||| Sbjct 1004280 ATGGTATCAGACGCCTCGACCTCGAGGGTGATGGTTTTACCCGTTAGGGTCTTCACGAAT 1004221 Query 41855 ATCTGCAT 41862 |||||||| Sbjct 1004220 ATCTGCAT 1004213 Score = 91.5 bits (100), Expect = 1e-13 Identities = 133/188 (71%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 41675 TTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATC 41734 ||||| || || || |||||||||||||| | || || | || || |||||||| || Sbjct 1007243 TTCTGGATATTGTAATCGGAGAGGGTGCGACCATCTTCTAATTGTTTTCCGGCGAAAATG 1007184 Query 41735 AGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC 41794 || || || ||||| | ||||| | ||||||||| ||| || ||||| Sbjct 1007183 AGACGTTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGGATCTTGGCCTTCACATTTTCG 1007124 Query 41795 ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAA 41854 | || || || ||| ||||| | || || ||||||||||| || ||||| ||||| Sbjct 1007123 ATGGTATCAGACGCCTCGACCTCGAGGGTGATGGTTTTACCCGTTAGGGTCTTCACGAAT 1007064 Query 41855 ATCTGCAT 41862 |||||||| Sbjct 1007063 ATCTGCAT 1007056 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462231192898800