Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_000924.1 Length=61670 Score E Sequences producing significant alignments: (Bits) Value seq13651 145 3e-30 seq35391 93.3 2e-14 seq36678 84.2 9e-12 >seq13651 Length=3921 Score = 145 bits (160), Expect = 3e-30 Identities = 330/494 (67%), Gaps = 2/494 (0%) Strand=Plus/Minus Query 26089 CTGGCGCTGATTGCCGCAGGTGCTTCTGCGCCTGAAATCCTCGACCAGTTTCTGGATGAA 26148 ||||| ||||| || || || || || || |||| || | ||||||| ||| || Sbjct 3507 CTGGCCCTGATCGCGGCCGGCGCATCGGCTCCTGTCATGATGTCGCAGTTTCAGGAAGAG 3448 Query 26149 AAGGAAGGTAACCACACCACAGCATACCGTGATGGTGCGGGTATCTGGACCATCTGCCGT 26208 || |||||| | | | || ||||||| || |||| || |||||||| || ||| | Sbjct 3447 AAAGAAGGTCAGCGCCTGACCGCATACCAGGACGGTGTTGGAATCTGGACAATTTGCGGC 3388 Query 26209 GGAGCCACCCGGGTGGATGGTAAGCCTGTTATTCCTGGCATGAAGCTGTCGAAGGAAAAA 26268 || | || ||| | || || ||| | || | ||| | || | Sbjct 3387 GGCGTGACGATGGTCAACGGCCAGAAGGTTGTGAAGGGGCAGCGCCTGACCGCCGAGCAG 3328 Query 26269 TGCGACCGGGTTAACGCCATTGAGCGTGATAAGGCGCTGGCATGGGTGGAGAAAAACATC 26328 ||| | | | || |||| |||| | ||||| || | ||||| || ||| || Sbjct 3327 TGCAAGCAGATTGACGCAGCAGAGCAGAAAAAGGCTCTCGACTGGGTAGACCGCAACGTC 3268 Query 26329 AAAGTGCCGCTGACCGAACCCCAGAAAGCGGGGATCGCGTCATTCTGTCCGTACAACATT 26388 || || ||||||||||||| || |||| || ||||| ||||||||||||| ||||| Sbjct 3267 AAGGTAACGCTGACCGAACCTCAAAAAGTTGGTATCGCCTCATTCTGTCCGTGGAACATC 3208 Query 26389 GGTCCCGGTAAGTGTTTCCCGTCGACGTTTTAC-AGACGAATTAATGCAGGTGATCGAAA 26447 || || || || || ||| | || || |||||| ||| | | || || || || || | Sbjct 3207 GGCCCTGGAAAATGCTTCACCTCCACCTTTTACAAGAAG-CTGAACGCCGGCGACCGCAT 3149 Query 26448 AGGTGCCTGCGAAGCTATTCGCTGGTGGATTAAGGACGGTGGCAGAGACTGCCGTATTCG 26507 ||||||||| || || ||| | ||||| | |||| |||| |||| ||||| || || Sbjct 3148 TGGTGCCTGCCGAGAAATCCGCCGCTGGATATACGACGCTGGCCGAGATTGCCGCATCCG 3089 Query 26508 TTCAAACAACTGTTACGGTCAGGTATCCCGTCGTGACCAGGAGAGCGCGCTGGCGTGCTG 26567 || || ||||| ||||| ||| | || || || ||||| || || || ||||| Sbjct 3088 CTCGAATAACTGCTACGGGCAGATCGTACGGCGCGATCAGGAAGCCGAACTAGCTTGCTG 3029 Query 26568 GGGAATCGACAGAT 26581 |||| | |||| || Sbjct 3028 GGGATTGGACAAAT 3015 >seq35391 Length=557 Score = 93.3 bits (102), Expect = 2e-14 Identities = 68/79 (86%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 21120 GGCCCTTTAGCTCAGTGGTGAGAGCGAGCGACTCATAATCGCCAGGTCGCTGGTTCAAAT 21179 ||||| ||||||||||||| ||||| ||||||||||||||| ||||| ||||||||| Sbjct 191 GGCCCCTTAGCTCAGTGGTTAGAGCAGGCGACTCATAATCGCTTGGTCGTTGGTTCAAAC 132 Query 21180 CCAGCAAGGGCCACCATAT 21198 ||| || ||||||||| || Sbjct 131 CCAACAGGGGCCACCAAAT 113 >seq36678 Length=505 Score = 84.2 bits (92), Expect = 9e-12 Identities = 155/225 (69%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 13526 GAATTACTGGATCAATCCACAGGAGTCATTATGACAAATACAGCAAAAATACTC-AACTT 13584 |||||||||||||||| ||||||||| |||||| ||||||| || | || || || || Sbjct 227 GAATTACTGGATCAATTCACAGGAGTAATTATGGCAAATACTGCTGAGGTAATCAAATTT 168 Query 13585 CGGCAGAGGTAACTTTGCCGAACAGGAGCGTAATGTGGCAGATCTCGATGATGGTTACGC 13644 | | || ||| || ||| |||||| | | ||||| ||| ||||||| || || | Sbjct 167 CCGAAGCTTGAAC-CTGGCGAGCAGGAGAGAAGAGTGGCTGATATCGATGACGGATATAC 109 Query 13645 CAGACTATCAAATATGCTGATTGAGGCTTATTCAGGCGCAGATCTGACCAAGCGACAGTT 13704 | | | | || |||| | || ||| ||||||||||| | || ||| || || Sbjct 108 CCGTGTCGCTAACGAGCTGCTGGAAGCTATCGCAGGCGCAGATTTAACAGCGCGGCAATT 49 Query 13705 TAAAGTGCTGCTTGCCATTCTGCGTAAAACCTATGGGTGGAATAA 13749 || || || | ||| | |||||||| || || | ||||| Sbjct 48 GAAGCTGATGATGGCCTACATCCGTAAAACATACGGCTTCAATAA 4 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 197136204443136