Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_001317.1 Length=30624 Score E Sequences producing significant alignments: (Bits) Value seq34830 107 4e-19 seq35391 93.3 8e-15 >seq34830 Length=582 Score = 107 bits (118), Expect = 4e-19 Identities = 112/147 (76%), Gaps = 0/147 (0%) Strand=Plus/Minus Query 21472 TCTAAATGGTCGGGTGCAAAGTGCGCATATCGCATGGTCATTTTTATATCTGTATGGCCG 21531 |||| || || || |||| ||| || || ||||| ||||| || ||||| || ||| Sbjct 389 TCTAGGTGTTCCGGCGCAAGGTGAGCGTAGCGCATTGTCATCTTGATATCATGGTGCCCG 330 Query 21532 AGTACGCGCTGCAACACCAAAATATTACCGCCATTCATCATAAAGTGACTAGCGAAGGTG 21591 || | || |||| ||||| ||| ||||||||| |||||||||||| ||||||||| Sbjct 329 AGGATACGTTGCAGCACCAGAATGTTACCGCCAGACATCATAAAGTGTGCAGCGAAGGTA 270 Query 21592 TGACGTAAAACGTGGGTAAGTTGTCCT 21618 || ||||| || ||||| ||||| ||| Sbjct 269 TGGCGTAACACATGGGTCAGTTGGCCT 243 >seq35391 Length=557 Score = 93.3 bits (102), Expect = 8e-15 Identities = 104/134 (78%), Gaps = 4/134 (3%) Strand=Plus/Plus Query 20899 CCGCCATTCTATCGCCACTCGAAAACGAGGCAACAAAAAGGCCACT-CGAGAGA-GTGGC 20956 |||||||| || ||||||| | | | || || ||||| |||||| ||||| | ||||| Sbjct 30 CCGCCATTTTACCGCCACT-GTGAGCAAGA-AATAAAAAAGCCACTTCGAGAAAAGTGGC 87 Query 20957 CTAACTGTATGTATTTACTACTTAAATTTGGTGGCCCCTGCTGGACTTGAACCAGCGACC 21016 | | |||| |||| | ||||||||||||||||| ||| |||||||| ||||| Sbjct 88 TTTTTTATATGATTTTAAAGCAAAAATTTGGTGGCCCCTGTTGGGTTTGAACCAACGACC 147 Query 21017 AAGCGATTATGAGT 21030 |||||||||||||| Sbjct 148 AAGCGATTATGAGT 161 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 97832423888528