Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_001355.1 Length=7902 Score E Sequences producing significant alignments: (Bits) Value seq8046 260 7e-66 >seq8046 Length=7925 Score = 260 bits (288), Expect = 7e-66 Identities = 584/872 (67%), Gaps = 19/872 (2%) Strand=Plus/Plus Query 6322 TGGTGACTGCCCGCCCTTAGAACTTATTACCAGTGTTATACAGGATGGCGATATGGTTGA 6381 ||||||||| || ||| | | ||| | || ||| ||||||| ||||||||||| Sbjct 375 TGGTGACTGTCCTCCCCTTCAGTTTACAAACACCACTATTGAGGATGGGGATATGGTTGA 434 Query 6382 CACAGGCTTTGGTGCTATGAATTTTGCTGATTTGCAGACCAATAAATCAGATGTTCCTAT 6441 || || || || || || ||||||| | | | ||| |||| ||||| ||||| || | Sbjct 435 AACCGGGTTCGGGGCCCTGGATTTTGCCGCTCTACAGTCCAACAAATCTGATGTCCCCCT 494 Query 6442 TGACATATGTGGCACTACATGTAAATATCCAGATTATTTACAAATGGCTGCAGACCCATA 6501 || || ||| | | |||||||||||| || ||| | |||||||||| ||||| || Sbjct 495 GGATATTTGTACTAACATATGTAAATATCCGGACTATCTGAAAATGGCTGCTGACCCCTA 554 Query 6502 TGGTGATAGATTAtttttttttCTACGGAAGGAACAAATGTTTGCCAGACAtttttttAA 6561 ||| ||| | || |||| || || | ||| || ||||| || | ||||||||||| Sbjct 555 TGGCGATTCTATGTTCTTTTCCCTGCGCAGGGAGCAGATGTTCACCCGGCATTTTTTTAA 614 Query 6562 CAGGGCTGGCGAGGTGGGGGAACCTGTGCCTGATACACTTATAATT-AAGGGTAGTGGAA 6620 ||| ||| | |||| || | | || || || ||| | || || | Sbjct 615 TCGGGGTGGGTCGATGGGTGACGCCCTCCCGGAGGAGCT-ATATGTCAAAAGTTCTACCG 673 Query 6621 ATCGCACGTCTGTAGGGAGTAGTATATATGTTAACACC------CCGAGCGGCTCTTTGG 6674 | || | | ||||| |||||| ||||| || || |||||| ||| Sbjct 674 TCCAGACCCCCG------GTAGT---TATGTTTACACCTCCACTCCCAGTGGCTCTATGG 724 Query 6675 TGTCCTCTGAGGCACAATTGTTTAATAAGCCATATTGGCTACAAAAAGCCCAGGGACATA 6734 | |||||||| || || ||||| ||||| || ||||| | || ||||||||||||| Sbjct 725 TATCCTCTGAACAGCAGTTATTTAACAAGCCTTACTGGCTGCGAAGGGCCCAGGGACATA 784 Query 6735 ACAATGGTATTTGTTGGGGTAATCAACTGTTTGTTACTGTGGTAGATACCACACGCAGTA 6794 ||||||| || || ||||| |||| | || | || ||||| || ||||| ||||| | Sbjct 785 ACAATGGCATGTGCTGGGGCAATCGGGTCTTCCTGACAGTGGTGGACACCACGCGCAGCA 844 Query 6795 CCAACATGACATTATGTGCATCCGTAACTACATCTTCCACATACACCAATTCTGATTATA 6854 | || | | || ||||| | |||| ||| | | || | || |||||| Sbjct 845 CAAATGTCTCTTTGTGTGCCACTGTAAACACAGAAACTAATTATAAGGCCTCCAATTATA 904 Query 6855 AAGAGTACATGCGTCATGTGGAAGAGTATGATTTACAATTTATTTTTCAATTATGTAGCA 6914 | || ||| | | ||| |||| ||||||||||| || || ||||||||| | || | | Sbjct 905 AGGAATACCTTAGGCATATGGAGGAGTATGATTTGCAGTTCATTTTTCAACTGTGCAAAA 964 Query 6915 TTACATTGTCTGCTGAAGTAATGGCCTATATTCACACAATGAATCCCTCTGTT-TTGGAA 6973 | ||| | | | || ||||||| || || || | ||| || | | ||| | || Sbjct 965 TAACACTTACCCCCGAGATAATGGCATACATACATAACATGGAT-GCGCGGTTGCTTGAG 1023 Query 6974 GACTGGAACTTTGGGTTATCGCCTCCCCCAAATGGTACATTAGAAGATACCTATAGGTAT 7033 |||||||||||||| || | || ||||| | | || |||| ||||| |||||| Sbjct 1024 GACTGGAACTTTGGTGTACCCCCGCCCCCGTCCGCCAGCTTGCAAGACACCTACAGGTAT 1083 Query 7034 GTGCAGTCACAGGCCATTACCTGTCAAAAGCCCACTCCTGAAAAGGAAAAGCCAGATCCC 7093 ||||||| || || || || ||||| |||||||| || ||| | |||||| Sbjct 1084 CTGCAGTCCCAAGCGATAACATGTCAGAAGCCCACACCCCCTAAGACCCCTACTGATCCC 1143 Query 7094 TATAAGAACCTTAGTTTTTGGGAGGTTAATTTAAAAGAAAAGTTTTCTAGTGAATTGGAT 7153 ||| | | | | || ||||| || || | | |||| ||||| | || ||||| Sbjct 1144 TATGCAACCATGACATTCTGGGATGTGGATCTCAGTGAAAGTTTTTCCATGGATCTGGAT 1203 Query 7154 CAGTATCCTTTGGGACGCAAGTTTTTGTTACA 7185 || | || ||||||||||||||||||| || Sbjct 1204 CAATTCCCCCTGGGACGCAAGTTTTTGTTGCA 1235 Score = 255 bits (282), Expect = 3e-64 Identities = 705/1071 (66%), Gaps = 11/1071 (1%) Strand=Plus/Plus Query 1722 GCTATTAAATATACCTGAAAACCAAATGTTAATAGAGCCACCAAAAATACAAAGTGGTGT 1781 ||| ||||| || || || || || ||| | ||||| ||||||||| || |||| Sbjct 3627 GCTGTTAAACATTCCCGAGAAGCATATGCTCATAGAACCACCAAAACTAAGAAGTACACC 3686 Query 1782 TGCAGCCCTGTATTGGTTTCGTACAGGTATATCAAATGCCAGTACAGT-TATAGGGGAAG 1840 ||| ||| |||| |||| ||| || |||| ||| || ||| ||||| Sbjct 3687 TGCTGCCTTGTACTGGTACAAGACATCCATGGGTAATGGGAGTGAGGTCTAT-GGGGAGA 3745 Query 1841 CACCAGAATGGATAACACGCCAAACAGTTATTGAACACGGGTTGGCAGACAGTCAGTTTA 1900 |||||||||||||| | || ||| | || | |||| | ||| || ||||| | Sbjct 3746 CACCAGAATGGATAGTGAGACAGACACTGATAGGACACAGTATGGAGGATGAGCAGTTCA 3805 Query 1901 AATTAACAGAAATGGTGCAGTGGGCGTATGATAATGACATATGCGAGGAGAGTGAAATTG 1960 ||||| | | |||||||||| || ||||| |||||||| || ||||| | | | | Sbjct 3806 AATTATCTGTCATGGTGCAGTACGCATATGACCATGACATAACGGACGAGAGCGCACTGG 3865 Query 1961 CATTTGAATATGCACAAAGGGGAGATTTTGATTCTAATGCACGAGCATTTTTAAATAGCA 2020 ||||||| || ||||| || || | || | ||||| ||||||| |||| |||| Sbjct 3866 CATTTGAGTACGCACAGCTGGCGGACGTGGACGCCAATGCGGCAGCATTTCTAAACAGCA 3925 Query 2021 ATATGCAGGCAAAATATGTGAAAGATTGTGCAACTATGTGTAGACATTATAAACATGCAG 2080 | ||||| || || | ||||| | || ||||| ||||| || || | ||||| Sbjct 3926 ACTGCCAGGCCAAGTACCTAAAAGACGCGGTGACAATGTGCAGACACTACAAGCGTGCAG 3985 Query 2081 AAATGAGGAAGATGTCTATAAAACAATGGATAAAACATAGGGGTTCTAAAATAGAAGGCA 2140 | | | | ||| ||| | || ||||| ||| ||| || || ||| || Sbjct 3986 AGAGGGAACAAATGAGTATGAGCCAGTGGATCAAATTTAGAGGGAGCAAGATATCAGAGG 4045 Query 2141 CAGGAAATTGGAAACCAATTGTACAATTCCTACGACATCAAAATATAGAATTCATTCCTT 2200 |||| ||||||| || || ||| | || || | ||||| |||| ||| | | | Sbjct 4046 AAGGAGATTGGAAGCCTATAGTAAAGTTTTTAAGGCATCAGGGGGTAGAGTTCGTGTCAT 4105 Query 2201 TTTTAACTAAATTTAAATTATGGCTGCACGGTACGCCaaaaaaaaaCTGCATAGCCATAG 2260 | | || ||||| | || | | ||| ||| || || || ||||||| | Sbjct 4106 TCCTTGCTGCCTTTAAGTCATTTTTAAAAGGTGTGCCCAAGAAGAATTGCATAGTGTTTT 4165 Query 2261 TAGGCCCTCCAGATACTGGGAAATCGTACTTTTGTATGAGTTTAATAAGCTTTCTAGGAG 2320 || ||| ||||||| || ||||| || || || |||||| | | || ||||| | Sbjct 4166 ATGGACCTGCAGATACAGGCAAATCATATTTCTGCATGAGTCTTTTGCAGTTCCTAGGTG 4225 Query 2321 GTACAGTTATTAGTCATGTAAATTCCAGCAGCCATTTTTGGTTGCAACCGTTAGTAGATG 2380 | | || || ||| |||||||| ||||| |||||| |||| || |||| || Sbjct 4226 GCGCTGTAATATCATATGCCAATTCCAGTAGCCACTTTTGGCTGCAGCCCTTAGCTGACA 4285 Query 2381 CTAAGGTAGCATTGTTAGATGATGCAACACAGCCATGTTGGATATATATGGATACATATA 2440 |||| ||| | | | || ||||| || | || |||| ||||| ||||||||| Sbjct 4286 GTAAGATAGGACTACTGGACGATGCGACGGCCCAGTGCTGGACGTATATTGATACATATC 4345 Query 2441 TGAGAAATTTGTTAGATGGTAATCCTATGAGTATTGACAGAAAGCATAAAGCATTGACAT 2500 | || || | ||||||| || || | ||||| ||||| || ||||| | || Sbjct 4346 TTAGGAACCTACTAGATGGAAACCCCTTCAGTATAGACAGGAAACATAAGACCCTGCTGC 4405 Query 2501 TAATTAAATGTCCACCTCTGCTAGTAACGTCCAACATAGATATTACTA-AAGAAGATAAA 2559 || |||||||| || | | |||| |||||||| || | ||| | || || | | Sbjct 4406 AGATAAAATGTCCTCCATTAATGATAACAACCAACATAAATCCT-CTAGAGGAGGACAGA 4464 Query 2560 TATAAGTATTTACATACTAGAGTAACAACATTTACATTTCCAAATCCATTCCCTTTTGAC 2619 | |||||||| | | ||||||||| |||| ||| | || ||||| || || | Sbjct 4465 TGGAAGTATTTGCGCAGCAGAGTAACACTGTTTAAGTTTACCAACCCATTTCCCTTCGCA 4524 Query 2620 AGAAATGGGAATGCAGTGTATGAACTGTCA--AATACAAACTGGAAATGtttttttGAAA 2677 || ||| | || ||| || | | ||| ||||||||||||| ||||| ||| Sbjct 4525 AGCCCAGGGGA-GC-CCCTATACCCTATAAATAATGCAAACTGGAAATGCTTTTTCCAAA 4582 Query 2678 GACTGTCGTCAAGCCTAGACATTCAGGATTCTGAGGACGAGGAAG---ATGGAAGCAATA 2734 | || ||| |||||||| | | | | ||||| |||||| |||||| || | Sbjct 4583 GGTCGTGGTCCCGCCTAGACCTAAACAGTCCAGAGGATCAGGAAGACAATGGAAACACTG 4642 Query 2735 GCCAAGCGTTTAGATGCGTGCCAGGAACAGTTGTTAGAACTTTATGAAGAA 2785 || | |||||||||||||||||||| |||| ||||||| |||||| || Sbjct 4643 GCGAGCCGTTTAGATGCGTGCCAGGAGACGTTGCTAGAACTGTATGAAAAA 4693 Score = 114 bits (126), Expect = 6e-22 Identities = 140/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 4444 CGACGCAAGCGTGCGTCAGCTACACAGCTATATCAAACATGTAAACTCACTGGAACATGC 4503 || || ||||| || || | || | |||||| |||||| || | ||||||| ||| Sbjct 6327 CGTCGGAAGCGCGCCTCCCCCACGGACTTATATCGAACATGCAAGCAGGCTGGAACGTGC 6386 Query 4504 CCCCCAGATGTAATTCCTAAGGTGGAGCACAACACCATTGCAGATCAAATATTAAAATGG 4563 ||||| ||| | || |||| |||||| || |||| | || ||| |||| |||||||| Sbjct 6387 CCCCCTGATATCATACCTAGGGTGGAACAGGACACATTAGCTGATAGAATACTAAAATGG 6446 Query 4564 GGAAGTTTGGGGGTGTTTTTTGGAGGGTTGGGTATAGGCACGGGTTCCGGCACTGGGGGT 4623 || || | ||||| ||||| || || | |||||||| || || |||||||||||| Sbjct 6447 GGCAGCCTAGGGGTCTTTTTCGGTGGCCTCGGTATAGGTACTGGAAGCGGCACTGGGGGA 6506 Query 4624 CGTACTGGCTA 4634 || || ||||| Sbjct 6507 CGCACAGGCTA 6517 Score = 86.0 bits (94), Expect = 3e-13 Identities = 138/197 (70%), Gaps = 11/197 (6%) Strand=Plus/Plus Query 5754 TAAACGCCGTAAACGTATTCCCTTAtttttttCAGATG------TGGCGGCCTAGCGACA 5807 |||||| ||||||||| | | || || ||| |||||| |||||||||| || | Sbjct 7652 TAAACGACGTAAACGTGTGCACTATTTCTTTGCAGATGGCTATGTGGCGGCCTAATGAAA 7711 Query 5808 GCACAGTATATGTGCCTCCTCCTAAC-CCTGTATCCAAAGTTGTTGCCACGGATGCTTAT 5866 ||| ||||| ||||||| ||| ||||| || || || | ||||||| ||| Sbjct 7712 GCAAGGTATACCTGCCTCC----AACACCTGTCTCAAAGGTGCTCAGTACGGATGTCTAT 7767 Query 5867 GTTACTCGCACCAACATATTTTATCATGCCAGCAGTTCTAGACTTCTTGCAGTGGGACAT 5926 || || || || || | | |||||||| | || ||||| || || |||| || ||| Sbjct 7768 GTCACGCGGACGAATGTTTATTATCATGGTGGGAGCTCTAGGCTCCTCACAGTAGGCCAT 7827 Query 5927 CCTTATTTTTCCATAAA 5943 || |||| ||| ||||| Sbjct 7828 CCATATTATTCTATAAA 7844 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 25160777990496