Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_001416.1 Length=48502 Score E Sequences producing significant alignments: (Bits) Value seq22233 93.3 1e-14 seq680 87.8 6e-13 >seq22233 Length=1593 Score = 93.3 bits (102), Expect = 1e-14 Identities = 76/90 (84%), Gaps = 2/90 (2%) Strand=Plus/Minus Query 44624 AAAAGAGGCGGCGCTTACTACCGATTCCGCCTAGTTGGTCACTTCGACGTATCGTCTGGA 44683 |||||||||||| || || ||||| ||||| ||||||| |||||| || || | |||| Sbjct 450 AAAAGAGGCGGCTCTCACCACCGAA-CCGCCAAGTTGGTAACTTCGTCGCATTGACTGGG 392 Query 44684 ACTCCAACCATCGCAGGCAGAGAGGTCTGC 44713 ||||||||||| |||||| ||||||||||| Sbjct 391 ACTCCAACCAT-GCAGGCTGAGAGGTCTGC 363 >seq680 Length=42727 Score = 87.8 bits (96), Expect = 6e-13 Identities = 122/169 (72%), Gaps = 4/169 (2%) Strand=Plus/Plus Query 10692 CAGGCGCTGGCTGCACAGAAAGCGGGGATTTCCGTCGGGCAGTATAAAGCCGCCATGCGT 10751 ||||| | || ||| | ||||| || ||||| ||||| ||||| || || ||||| Sbjct 1601 CAGGCCATCGCAGCAGAAAAAGCCGGTATTTCTGTCGGCCAGTACCGCGCAGCGATGCGG 1660 Query 10752 ATGCT--GCCTGCACAGTTCACCGACGTGGCCACGCAGCTTGCAGGCGGGCAAAGTCCGT 10809 ||| ||| ||| | |||||||| | | |||||||| ||||||||||| |||| Sbjct 1661 CAGCTTGGCCCGCAGA--TCACCGACATCGTAACGCAGCTGCAAGGCGGGCAAAACCCGT 1718 Query 10810 GGCTGATCCTGCTGCAACAgggggggCAGGTGAAGGACTCCTTCGGCGG 10858 ||| ||| |||| ||||| || ||| | || ||||||||||| || Sbjct 1719 TTACGATTCTGGTGCAGCAGGGCGGCCAGATCAAAGACTCCTTCGGGGG 1767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 155017020575872