Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_001526.4 Length=7906 Score E Sequences producing significant alignments: (Bits) Value seq8046 338 3e-89 >seq8046 Length=7925 Score = 338 bits (374), Expect = 3e-89 Identities = 795/1191 (67%), Gaps = 47/1191 (4%) Strand=Plus/Plus Query 5006 CCTGACCCCAATAAGTTTGGTTTTCCTGACACCTCATTTTATAATCCAGATACACAGCGG 5065 || |||||||||||||||||| | ||||| || | ||| |||| || || ||||| Sbjct 70 CCGGACCCCAATAAGTTTGGTCTGCCTGATGCCAACCTCTATGATCCCGACACCCAGCGT 129 Query 5066 CTGGTTTGGGCCTGTGTAGGTGTTGAGGTAGGTCGTGGTCAGCCATTAGGTGTGGGCATT 5125 ||| | ||||||||||| || |||||||| |||||||| ||||| | |||||||| || Sbjct 130 CTGCTGTGGGCCTGTGTCGGAGTTGAGGTGGGTCGTGGCCAGCCTCTGGGTGTGGGGATA 189 Query 5126 AGTGGCCATCCTTTATTAAATAAATTGGATGACACAGAAAATGCT---AGTGCTTATGCA 5182 || || |||| | || | | ||||||| || |||||||| | | | | || Sbjct 190 TCCGGTCACCCTTACTATAACAGACTGGATGATACTGAAAATGCACACAATCCCGACACA 249 Query 5183 GCAAATGCAGGTGTGGATAATAGAGAATGTATATCTATGGATTACAAACAAACACAATTG 5242 || ||| || | || |||||| ||||| |||||||| ||||| ||||| || Sbjct 250 GCTGATGATGG-GAGG------GAGAAT--ATATCCATGGATTATAAACAGACACAGCTG 300 Query 5243 TGTTTAATTGGTTGCAAACCACCTATAGGGGAACACTGGGGCAAAGGATCCCCATGTACC 5302 | | | | || ||||| || |||||||| ||||| ||| ||| || | | || | | Sbjct 301 TTTATTTTGGGATGCAAGCCTCCTATAGGTGAACATTGGTCCAAGGGCACTACCTGCAGC 360 Query 5303 AATGT----TGCAGTAAATCCAGGTGATTGTCCACCATTAGAGTTAATAAACACAGTTAT 5358 || ||| || ||||| ||||| || | |||| | |||||| ||| Sbjct 361 GG-GTCATCTGCTGTT------GGTGACTGTCCTCCCCTTCAGTTTACAAACACCACTAT 413 Query 5359 TCAGGATGGTGATATGGTTGATACTGGCTTTGGTGCTATGGACTTTACTACATTACAGGC 5418 | ||||||| ||||||||||| || || || || || |||| ||| | | ||||| | Sbjct 414 TGAGGATGGGGATATGGTTGAAACCGGGTTCGGGGCCCTGGATTTTGCCGCTCTACAGTC 473 Query 5419 TAACAAAAGTGAAGTTCCACTGGATATTTGTACATCTATTTGCAAATATCCAGATTATAT 5478 |||||| ||| || || |||||||||||||| || || |||||||| || ||| | Sbjct 474 CAACAAATCTGATGTCCCCCTGGATATTTGTACTAACATATGTAAATATCCGGACTATCT 533 Query 5479 TAAAATGGTGTCAGAACCATATGGCGACAGCTTAtttttttATTTACGAAGGGAACAAAT 5538 ||||||| | || || |||||||| | || |||| | || ||||| || || Sbjct 534 GAAAATGGCTGCTGACCCCTATGGCGATTCTATGTTCTTTTCCCTGCGCAGGGAGCAGAT 593 Query 5539 GTTTGTTAGACATTTATTTAATAGGGCTGGTACTGTTGGTGAAAATGTACCAGACGATTT 5598 ||| | ||||| |||||| ||| ||| | | ||||| | || || || | Sbjct 594 GTTCACCCGGCATTTTTTTAATCGGGGTGGGTCGATGGGTGACGCCCTCCCGGAGGAGCT 653 Query 5599 ATACATTAAAGGCTCTGGGTCTACTGCAAATTTAGCCAGTTCAAATTATTTT----CCTA 5654 ||| | ||| | ||| || | | || || | |||| || ||| Sbjct 654 ATATGTCAAAAGTTCT------ACCGTCCAGACCCCCGGT---AGTTATGTTTACACCTC 704 Query 5655 CAC--CTAGTGGTTCTATGGTTACCTCTGATGCCCAAATATTCAATAAACCTTATTGGTT 5712 ||| | ||||| |||||||| ||||||| || |||| || || ||||| ||| | Sbjct 705 CACTCCCAGTGGCTCTATGGTATCCTCTGAACAGCAGTTATTTAACAAGCCTTACTGGCT 764 Query 5713 ACAACGAGCACAGGGCCACAATAATGGCATTTGTTGGGGTAACCAACTATTTGTTACTGT 5772 | | | || ||||| || || |||||||| || ||||| || | | || | || || Sbjct 765 GCGAAGGGCCCAGGGACATAACAATGGCATGTGCTGGGGCAATCGGGTCTTCCTGACAGT 824 Query 5773 TGTTGATACTACACGCAGTACAAATATGTCATTATGTGCTGCCATATCTACTTCAGAAAC 5832 || || || || ||||| |||||| | || || ||||| | || || |||||| Sbjct 825 GGTGGACACCACGCGCAGCACAAATGTCTCTTTGTGTGCCACTGTAAACAC---AGAAAC 881 Query 5833 TACATATAAAAATACTAACTTTAAGGAGTACCTACGACATGGGGAGGAATATGATTTACA 5892 || ||||| | || | |||||| ||||| | ||| |||||| |||||||| || Sbjct 882 TAATTATAAGGCCTCCAATTATAAGGAATACCTTAGGCATATGGAGGAGTATGATTTGCA 941 Query 5893 GTTTATTTTTCAACTGTGCAAAATAACCTTAACTGCAGACGTTATGACATACATACATTC 5952 ||| ||||||||||||||||||||||| | || | || | ||| ||||||||||| Sbjct 942 GTTCATTTTTCAACTGTGCAAAATAACACTTACCCCCGAGATAATGGCATACATACATAA 1001 Query 5953 TATGAATTCCACTATTTTGGAGGACTGGAATTTTGGTCTACAACCTCCCCCAGGAGGCAC 6012 ||| || | | | ||||||||||| |||||| ||| || ||||| | || Sbjct 1002 CATGGATGCGCGGTTGCTTGAGGACTGGAACTTTGGTGTACCCCCGCCCCCGTCCGCCAG 1061 Query 6013 ACTAGAAGATACTTATAGGTTTGTAACATCCCAGGCAATTGCTTGTCAAAAACATACACC 6072 | |||| || || |||| | | ||||| || || | ||||| || | ||||| Sbjct 1062 CTTGCAAGACACCTACAGGTATCTGCAGTCCCAAGCGATAACATGTCAGAAGCCCACACC 1121 Query 6073 TCC--AG-CACCTAAAGAAGATCCCCTTAAAAAATACACTTTTTGGGAAGTAAATTTAAA 6129 || || | |||| |||||| | || || || ||||| || || | | Sbjct 1122 CCCTAAGACCCCTA---CTGATCCCTATGCAACCATGACATTCTGGGATGTGGATCTCAG 1178 Query 6130 GGAAAAGTTTTCTGCAGACCTAGATCAGTTTCCTTTAGGACGCAAATTTTT 6180 |||| ||||| || || ||||| || || | |||||||| ||||| Sbjct 1179 TGAAAGTTTTTCCATGGATCTGGATCAATTCCCCCTGGGACGCAAGTTTTT 1229 Score = 232 bits (256), Expect = 3e-57 Identities = 540/806 (67%), Gaps = 14/806 (2%) Strand=Plus/Plus Query 912 TATGATGATAGAGCCTCCAAAATTGCGTAGTACAGCAGCAGCATTATATTGGTATAAAAC 971 |||| | ||||| || |||||| | | |||||| | || || || || ||||| || || Sbjct 3651 TATGCTCATAGAACCACCAAAACTAAGAAGTACACCTGCTGCCTTGTACTGGTACAAGAC 3710 Query 972 AGGTATATCAAATATTAGTGAAGTGTATGGAGACACGCCAGAATGGATACAAAGACAAAC 1031 | || ||| ||||| || ||||| || || |||||||||||| ||||| || Sbjct 3711 ATCCATGGGTAATGGGAGTGAGGTCTATGGGGAGACACCAGAATGGATAGTGAGACAGAC 3770 Query 1032 AGTATTACAACATAGTTTTAATGATTGTACATTTGAA-TTATCACAGATGGTACAATGGG 1090 | | || ||| ||| | | ||| | || || || ||||| ||||| || | | Sbjct 3771 ACTGATAGGACACAGTATGGAGGAT-GAGCAGTTCAAATTATCTGTCATGGTGCAGTACG 3829 Query 1091 CCTACGATAATGACATAGTAGACGATAGTGAAATTGCATATAAATATGCACAATTGGCAG 1150 | || || |||||||| ||||| || | | | |||| | | || ||||| |||| | Sbjct 3830 CATATGACCATGACATAACGGACGAGAGCGCACTGGCATTTGAGTACGCACAGCTGGCGG 3889 Query 1151 ACACTAATAGTAATGCAAGTGCCTTTCTAAAAAGTAATTCACAGGCAAAAATTGTAAAGG 1210 || | ||||| || |||||||| || || | ||||| || |||| | Sbjct 3890 ACGTGGACGCCAATGCGGCAGCATTTCTAAACAGCAACTGCCAGGCCAAGTACCTAAAAG 3949 Query 1211 ATTGTGCAACAATGTGTAGACATTATAAACGAGCAGaaaaaaaaCAAATGAGTATGAGTC 1270 | | |||||||| ||||| || || || ||||| | |||||||||||||||| | Sbjct 3950 ACGCGGTGACAATGTGCAGACACTACAAGCGTGCAGAGAGGGAACAAATGAGTATGAGCC 4009 Query 1271 AATGGATAAAATATAGATGTGATAGGGTAGATGATGGAGGTGATTGGAAGCAAATTGTTA 1330 | ||||| |||| |||| | | | || || | ||| |||||||||| || || | Sbjct 4010 AGTGGATCAAATTTAGAGGGAGCAAGATATCAGAGGAAGGAGATTGGAAGCCTATAGTAA 4069 Query 1331 TGTTTTTAAGGTATCAAGGTGTAGAGTTTATGTCATTTTTAACTGCATTAAAAAGATTTT 1390 |||||||||| |||| || |||||||| ||||||| | |||| || || ||||| Sbjct 4070 AGTTTTTAAGGCATCAGGGGGTAGAGTTCGTGTCATTCCTTGCTGCCTTTAAGTCATTTT 4129 Query 1391 TGCAAGGCATACCTaaaaaaaaTTGCATATTACTATATGGTGCAGCTAACACAGGTAAAT 1450 | |||| | || || || ||||||||| | | ||||| | || | ||||| |||| Sbjct 4130 TAAAAGGTGTGCCCAAGAAGAATTGCATAGTGTTTTATGGACCTGCAGATACAGGCAAAT 4189 Query 1451 CATTATTTGGTATGAGTTTAATGAAATTTCTGCAAGGGTCTGTAATATGTTTTGTAAATT 1510 ||| || | |||||| | || | || || || ||||||||| | || |||| Sbjct 4190 CATATTTCTGCATGAGTCTTTTGCAGTTCCTAGGTGGCGCTGTAATATCATATGCCAATT 4249 Query 1511 CTAAAAGCCATTTTTGGTTACAACCATTAGCAGATGCCAAAATAGGTATGTTAGATGATG 1570 | | ||||| |||||| | || || ||||| || || ||||| | | || |||| Sbjct 4250 CCAGTAGCCACTTTTGGCTGCAGCCCTTAGCTGACAGTAAGATAGGACTACTGGACGATG 4309 Query 1571 CTACAGTGCCCTGTTGGAACTACATAGATGACA-ATTTAAGAAATGCATTGGATGGAAA- 1628 | || | | || |||| || || ||| ||| || | || || | | |||||||| Sbjct 4310 CGACGGCCCAGTGCTGGACGTATATTGAT-ACATATCTTAGGAACCTACTAGATGGAAAC 4368 Query 1629 ---TTTAGTTTCTATGGATGTAAAGCAT-AGACCATTGGTACAACTAAAATGCCCTCCAT 1684 || || ||| || || ||| ||||| || | || ||||||| ||||||| Sbjct 4369 CCCTTCAG----TATAGACAGGAAACATAAGACC-CTGCTGCAGATAAAATGTCCTCCAT 4423 Query 1685 TATTAATTACATCTAACATTAATGCT 1710 || | || ||| | ||||| ||| || Sbjct 4424 TAATGATAACAACCAACATAAATCCT 4449 Score = 107 bits (118), Expect = 1e-19 Identities = 175/252 (69%), Gaps = 0/252 (0%) Strand=Plus/Plus Query 4741 AAACGACGTAAACGTTTACCATAttttttttCAGATGTCTCTTTGGCTGCCTAGTGAGGC 4800 ||||||||||||||| | | ||||| ||| |||||| || | |||| ||||| ||| Sbjct 7653 AAACGACGTAAACGTGTGCACTATTTCTTTGCAGATGGCTATGTGGCGGCCTAATGAAAG 7712 Query 4801 CACTGTCTACTTGCCTCCTGTCCCAGTATCTAAGGTTGTAAGCACGGATGAATATGTTGC 4860 || || ||| ||||||| || || || ||||| | || ||||||| ||||| | Sbjct 7713 CAAGGTATACCTGCCTCCAACACCTGTCTCAAAGGTGCTCAGTACGGATGTCTATGTCAC 7772 Query 4861 ACGCACAAACATATATTATCATGCAGGAACATCCAGACTACTTGCAGTTGGACATCCCTA 4920 || || || | |||||||||| || | || || || || |||| || ||||| || Sbjct 7773 GCGGACGAATGTTTATTATCATGGTGGGAGCTCTAGGCTCCTCACAGTAGGCCATCCATA 7832 Query 4921 TTTTCCTATTAAAAAACCTAACAATAACAAAATATTAGTTCCTAAAGTATCAGGATTACA 4980 || | |||| || ||| || || ||| || | | || || || ||||| || | || Sbjct 7833 TTATTCTATAAAGAAAAATAGCACTAATAAGGTGTCTGTACCCAAGGTATCGGGCTACCA 7892 Query 4981 ATACAGGGTATT 4992 ||| | || || Sbjct 7893 GTACCGTGTGTT 7904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 25173572690720