Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_001541.1 Length=7868 Score E Sequences producing significant alignments: (Bits) Value seq8046 98.7 5e-17 >seq8046 Length=7925 Score = 98.7 bits (108), Expect = 5e-17 Identities = 201/299 (67%), Gaps = 0/299 (0%) Strand=Plus/Plus Query 2625 CCaaaaaaaaaTTGCATGGTGTTTTATGGGCCACCAAATAGTGGGAAGTCATATTTTTGC 2684 || || || |||||||| ||||||||||| || || ||| || || |||||||| ||| Sbjct 4141 CCCAAGAAGAATTGCATAGTGTTTTATGGACCTGCAGATACAGGCAAATCATATTTCTGC 4200 Query 2685 ATGAGCCTCATAAGATTACTTGCAGGACGGGTCTTGTCGTTTGCAAACAGCAGAAGCCAT 2744 ||||| || | || || | || || | || | ||| || ||| ||||| Sbjct 4201 ATGAGTCTTTTGCAGTTCCTAGGTGGCGCTGTAATATCATATGCCAATTCCAGTAGCCAC 4260 Query 2745 TTTTGGCTGCAACCATTAGCAGACGCCAAGCTAGCGCTCGTGGATGATGCTACATCCGCG 2804 ||||||||||| || ||||| ||| ||| ||| || |||| ||||| || || | Sbjct 4261 TTTTGGCTGCAGCCCTTAGCTGACAGTAAGATAGGACTACTGGACGATGCGACGGCCCAG 4320 Query 2805 TGCTGGGATTTCATTGATACATACCTCAGAAATGCCCTTGATGGCAATCCCATATCGGTG 2864 |||||| | ||||||||||| || || || || ||||| || ||| | | Sbjct 4321 TGCTGGACGTATATTGATACATATCTTAGGAACCTACTAGATGGAAACCCCTTCAGTATA 4380 Query 2865 GACCTGAAGCACAAGGCACCAATAGAGATTAAGTGCCCTCCCCTCCTGATAACCACAAA 2923 ||| ||| || ||| | | | |||| || || ||||| | ||||||| || || Sbjct 4381 GACAGGAAACATAAGACCCTGCTGCAGATAAAATGTCCTCCATTAATGATAACAACCAA 4439 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 25052023038592