Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_001586.1 Length=7961 Score E Sequences producing significant alignments: (Bits) Value seq8046 342 3e-90 >seq8046 Length=7925 Score = 342 bits (378), Expect = 3e-90 Identities = 797/1190 (67%), Gaps = 14/1190 (1%) Strand=Plus/Plus Query 1608 ATATACACACATACAATGGTTAACCTGTACCTGGGGAATGGTATTGTTAATGCTAATTAG 1667 |||| |||||||||| |||| || ||||||||||||| |||| ||| | | | Sbjct 3519 ATATGCACACATACAGATACAAACCAGTTCCTGGGGAATGGTGGTGTTTATGTTGTTGCG 3578 Query 1668 ATTTAAATGTGGCAAGAATCGCACCACAGTGTCTAAAGGAATGTGCAAACTATTAAATAT 1727 | || |||| ||||| | ||| || || || ||| ||| || ||||| || Sbjct 3579 CTACAACTGTGCAAAGAACAGGGACACCGTCTCCAAGAACATGAGCATGCTGTTAAACAT 3638 Query 1728 ACCTGCTAATCAACTGTTAATAGAGCCGCCACGATTACAAAGTGTGGCAGCAGCAATATA 1787 || | || || || | ||||| || ||| | || |||| | || || | || Sbjct 3639 TCCCGAGAAGCATATGCTCATAGAACCACCAAAACTAAGAAGTACACCTGCTGCCTTGTA 3698 Query 1788 TTGGTTTCGAG-CAGGAATATCTAATGCCAGTGTAGTAACCGGGGAAACACCCGAATGGA 1846 |||| | || || || ||||| |||| || ||||| ||||| ||||||| Sbjct 3699 CTGGTA-CAAGACATCCATGGGTAATGGGAGTGAGGTCTATGGGGAGACACCAGAATGGA 3757 Query 1847 TACAAAGACAAACAATTGTAGAACATTGCTTTGCAGATACACAGTTTAATTTAACAGAAA 1906 || ||||| ||| | ||| ||| | | | ||| ||||| || ||| | | | Sbjct 3758 TAGTGAGACAGACACTGATAGGACACAGTATGGAGGATGAGCAGTTCAAATTATCTGTCA 3817 Query 1907 TGGTGCAATGGGCATATGATAATGATTTAACCGAAGATAGTGACATTGCATATGAATATG 1966 ||||||| | |||||||| |||| |||| || || || | | |||| ||| || | Sbjct 3818 TGGTGCAGTACGCATATGACCATGACATAACGGACGAGAGCGCACTGGCATTTGAGTACG 3877 Query 1967 CCCAACGTGCTGACACAGATAGTAATGCAGCTGCATTTTTAAAAAGCAACTGTCAGGCAA 2026 | || | || ||| || ||||| || |||||| |||| |||||||| ||||| | Sbjct 3878 CACAGCTGGCGGACGTGGACGCCAATGCGGCAGCATTTCTAAACAGCAACTGCCAGGCCA 3937 Query 2027 AATATGTAAAAGATTGTGGAATTATGTGTAGACACTATAAAAAAGCACAAATGAAACGTA 2086 | || ||||||| | | ||||| |||||||| || ||| | | | ||| | Sbjct 3938 AGTACCTAAAAGACGCGGTGACAATGTGCAGACACTACAAGCGTGCAGAGAGGGAACAAA 3997 Query 2087 TGTCAATGCCACAGTGGATTAAACATAGAAGT-GAAAGAACTGGCGATAATGGTGATTGG 2145 || ||| |||||||| ||| |||| | | |||| | || | || |||||| Sbjct 3998 TGAGTATGAGCCAGTGGATCAAATTTAGAGGGAGCAAGATATCA-GAGGAAGGAGATTGG 4056 Query 2146 AGACCTATAGTAAAATTTATTAGATATCAAGGAATAGATTTTTTAACATTTATGTCTGCA 2205 | ||||||||||| ||| | || |||| || |||| || | |||| | |||| Sbjct 4057 AAGCCTATAGTAAAGTTTTTAAGGCATCAGGGGGTAGAGTTCGTGTCATTCCTTGCTGCC 4116 Query 2206 TTCAAAAAATTTTTGCATAATATACCAAAGAAAAGCTGTTTAGTATTAATTGGTCCGCCA 2265 || || |||||| | | | || ||||| | || |||| || ||| || || Sbjct 4117 TTTAAGTCATTTTTAAAAGGTGTGCCCAAGAAGAATTGCATAGTGTTTTATGGACCTGCA 4176 Query 2266 AATACAGGAAAATCACAGTTTGGAATGAGTTTAGTAAAGTTTTTAGCAGGAACAGTAATT 2325 ||||||| |||||| | || | |||||| | | |||| ||| || | ||||| Sbjct 4177 GATACAGGCAAATCATATTTCTGCATGAGTCTTTTGCAGTTCCTAGGTGGCGCTGTAATA 4236 Query 2326 TCCTTTGTAAATTCACACAGCCATTTTTGGTTGCAGCCATTAG---ACAGTGCAAAAATA 2382 || | || ||||| ||||| |||||| ||||||| |||| ||||| || ||| Sbjct 4237 TCATATGCCAATTCCAGTAGCCACTTTTGGCTGCAGCCCTTAGCTGACAGT---AAGATA 4293 Query 2383 GCAATGCTAGATGATGCAACACCTCCATGTTGGACATACTTAGATACATATTTAAGAAAT 2442 | | | || || ||||| || | | || ||||| || | ||||||||| | || || Sbjct 4294 GGACTACTGGACGATGCGACGGCCCAGTGCTGGACGTATATTGATACATATCTTAGGAAC 4353 Query 2443 TTACTAGATGGCAATCCATGCAGTATTGATAGAAAGCATAAAGCATTAACAGTTGTTAAA 2502 |||||||||| || || | |||||| || || || ||||| | | | | | |||| Sbjct 4354 CTACTAGATGGAAACCCCTTCAGTATAGACAGGAAACATAAGACCCTG-CTGCAGATAAA 4412 Query 2503 -TGTCCACCATTAATAATAACATCAAATACAGATATTAGAACAGAAGACAGATGGAAATA 2561 ||||| |||||||| |||||| | || | | || | | || ||||||||||| || Sbjct 4413 ATGTCCTCCATTAATGATAACAACCAACATAAATCCTCTAGAGGAGGACAGATGGAAGTA 4472 Query 2562 CTTATATAGTAGAATTAGTTTGTTTGAATTTCCAAACCCATTTCCATTAGATAAAAATGG 2621 || || ||| | | ||||| | ||| | ||||||||||| || | | || Sbjct 4473 TTTGCGCAGCAGAGTAACACTGTTTAAGTTTACCAACCCATTTCCCTTCGCAAGCCCAGG 4532 Query 2622 AAATCCTGTATATGTGTTAAATGATGAAAATTGGAAATCATTTTTTCAAAGGTTGTGGTC 2681 | || |||| ||||| ||| ||| ||||||| ||||| ||||||| |||||| Sbjct 4533 GGAGCCCCTATACCCTATAAATAATGCAAACTGGAAATGCTTTTTCCAAAGGTCGTGGTC 4592 Query 2682 CAGCTTAGAATTTCAAGAATC-AGAGGACGAGGAAGAAAATGGAGACACTGGCCAAACGT 2740 | || |||| | || | || |||||| ||||||| |||||| |||||||| | ||| Sbjct 4593 CCGCCTAGACCTA-AACAGTCCAGAGGATCAGGAAGACAATGGAAACACTGGCGAGCCGT 4651 Query 2741 TTAGATGCGTGCCAGGAACAGTTGTTAGAACTGTATGAGGAAGATAGTAA 2790 ||||||||||||||||| |||| ||||||||||||| ||||||| || Sbjct 4652 TTAGATGCGTGCCAGGAGACGTTGCTAGAACTGTATGAAAAAGATAGCAA 4701 Score = 273 bits (302), Expect = 1e-69 Identities = 732/1111 (66%), Gaps = 25/1111 (2%) Strand=Plus/Plus Query 6049 TCTATTCCAAAGGTGTCTGGATTGCAGTATAGAGTATTTAGGGTTAGGCTTCCAGACCCT 6108 ||| | || ||||| || || | ||||| | || || || | ||| || ||||| Sbjct 19 TCTGTACCCAAGGTATCGGGCTACCAGTACCGTGTGTTCCATGTAAAGCTGCCGGACCCC 78 Query 6109 AATAAATTTACATTACCTGAAACAAACTTATATAATCCTGAAACACAACGTATGGTGTGG 6168 ||||| ||| | ||||| | ||| | ||| |||| || || || ||| || ||||| Sbjct 79 AATAAGTTTGGTCTGCCTGATGCCAACCTCTATGATCCCGACACCCAGCGTCTGCTGTGG 138 Query 6169 GCCTGTGTGGGTTTGGAGGTTGGCCGTGGACAGCCTTTAGGTGTTGGTCTTAGTGGGCAT 6228 |||||||| || | ||||| || ||||| |||||| | ||||| || | || || Sbjct 139 GCCTGTGTCGGAGTTGAGGTGGGTCGTGGCCAGCCTCTGGGTGTGGGGATATCCGGTCAC 198 Query 6229 CCTTTATTAAATAGATTGGATGATACTGAAAATGGGCCTAGATATGCTG-CAGGGCCTGG 6287 |||| | || ||| |||||||||||||||||| | | || | | || || | Sbjct 199 CCTTACTATAACAGACTGGATGATACTGAAAATGCACACA---ATCCCGACACAGCT--G 253 Query 6288 AACTGATAATAGAGAAAATGTATCTATGGATTGTAAACAAACCCAATTGTGTTTGGTGGG 6347 | |||| || || ||| |||| ||||||| |||||| || || ||| | | |||| Sbjct 254 A--TGATGGGAGGGAGAATATATCCATGGATTATAAACAGACACAGCTGTTTATTTTGGG 311 Query 6348 TTGTAAACCTGCCATTGGCGAGCATTGGGGTAAGGGTGCTGCTTGCTCTGCACAATCAAA 6407 || || ||| | || || || |||||| ||||| || | ||| | ||| Sbjct 312 ATGCAAGCCTCCTATAGGTGAACATTGGTCCAAGGGCACTACCTGCAGCGGGTCATCTGC 371 Query 6408 TG---GCGACTGCCCACCTTTGGAATTACAAAACAGTGTTATTCAGGATGGTGATATGGC 6464 || | ||||| || || | | || ||||| |||| ||||||| ||||||| Sbjct 372 TGTTGGTGACTGTCCTCCCCTTCAGTTTACAAACACCACTATTGAGGATGGGGATATGGT 431 Query 6465 AGATGTAGGGTTTGGAGCAATGGACTTTAGTGCTTTGCAAACTTCAAAAGCTGAGGTGCC 6524 || ||||| || || |||| ||| ||| | || | ||| |||| || || Sbjct 432 TGAAACCGGGTTCGGGGCCCTGGATTTTGCCGCTCTACAGTCCAACAAATCTGATGTCCC 491 Query 6525 ATTAGATATTATGAACTC-CATTAGTAAATATCCTGACTATTTAAAAATGTCTGCAGAGG 6583 | |||||| || ||| ||| |||||||||| |||||| | |||||| |||| || Sbjct 492 CCTGGATATT-TGTACTAACATATGTAAATATCCGGACTATCTGAAAATGGCTGCTGACC 550 Query 6584 CCTATGGCGACAATATGTTTTTCTTTTTGAGACGGGAACAAATGTTTGTTCGTCACTTGT 6643 |||||||||| |||||| || | || | |||| || ||||| || || || | Sbjct 551 CCTATGGCGATTCTATGTTCTTTTCCCTGCGCAGGGAGCAGATGTTCACCCGGCATTTTT 610 Query 6644 TTAATAGGGCAGGAACCCTTGGTGAACCTGTTCCTGAGGACATGTATATAAAAGCTTCTA 6703 ||||| ||| || | | ||||| | | || ||||| | ||| | ||| ||||| Sbjct 611 TTAATCGGGGTGGGTCGATGGGTGACGCCCTCCCGGAGGAGCTATATGTCAAAAGTTCTA 670 Query 6704 ATGGTGCTTCTGGCAGAAATAATTTAGCTAGTAGTATTTATTATCCAACTCCCAGTGGTT 6763 | || |||| ||| || | |||| | ||||||||||| | Sbjct 671 CCG-----TC---CAGACCCCCGGTAGTTA----TGTTTACACCTCCACTCCCAGTGGCT 718 Query 6764 CTATGGTCACCTCTGATGCACAAATATTTAATAAACCATATTGGTTACAGCAGGCACAAG 6823 ||||||| ||||||| || ||||||| || || || ||| | | ||| || | Sbjct 719 CTATGGTATCCTCTGAACAGCAGTTATTTAACAAGCCTTACTGGCTGCGAAGGGCCCAGG 778 Query 6824 GCCACAATAATGGTATATGTTGGGGTAATCAAGTGTTTCTAACTGTTGTGGATACTACCC 6883 | || || ||||| || || ||||| |||| || || || || || ||||| || || | Sbjct 779 GACATAACAATGGCATGTGCTGGGGCAATCGGGTCTTCCTGACAGTGGTGGACACCACGC 838 Query 6884 GTAGTACTAACATGACTGTGTGTGCTACTGTAACAACTGAAGACACATACAAGTCTACTA 6943 | || || || | || ||||||| ||||||| || ||| | || ||| | | | Sbjct 839 GCAGCACAAATGTCTCTTTGTGTGCCACTGTAAACACAGAAACTAATTATAAGGCCTCCA 898 Query 6944 ACTTTAAGGAATATCTACGCCATGCAGAGGAATATGATATACAGTTTATATTTCAATTGT 7003 | | ||||||||| || | ||| ||||| |||||| | ||||| || |||||| ||| Sbjct 899 ATTATAAGGAATACCTTAGGCATATGGAGGAGTATGATTTGCAGTTCATTTTTCAACTGT 958 Query 7004 GCAAAATTACATTATCTGTAGAGGTTATGTCATATATCCACACCATGAATCCTGACATAC 7063 ||||||| ||| | | ||| | ||| |||| || || | |||| || | | | Sbjct 959 GCAAAATAACACTTACCCCCGAGATAATGGCATACATACATAACATGGATGCGCGGTTGC 1018 Query 7064 TAGACGATTGGAATGTTGGTGTAGCTCCACCGCCCTCTGGTACTTTAGAAGATAGTTATA 7123 | || || ||||| |||||||| | || || || || | | || |||| | || | Sbjct 1019 TTGAGGACTGGAACTTTGGTGTACCCCCGCCCCCGTCCGCCAGCTTGCAAGACACCTACA 1078 Query 7124 GATTTGTGCAGTCTCAGGCCATACGATGTCA 7154 | | | ||||||| || || ||| |||||| Sbjct 1079 GGTATCTGCAGTCCCAAGCGATAACATGTCA 1109 Score = 138 bits (152), Expect = 6e-29 Identities = 164/222 (74%), Gaps = 3/222 (1%) Strand=Plus/Plus Query 5814 TTGCATCCCAGTTATAT---GTGGCGTAAGCGCCGTAAACCTGTACCATAtttttttGCA 5870 |||| || |||||| | ||||| ||| || ||||||| ||| | ||||| |||||| Sbjct 7626 TTGCTGCCAAGTTATGTTCTGTGGCCTAAACGACGTAAACGTGTGCACTATTTCTTTGCA 7685 Query 5871 GATGTCCGTGTGGCGGCCTAGTGACAACAAGGTTTATCTGCCTCCTCCTCCTGTTTCCAA 5930 |||| | |||||||||||| ||| | |||||| || |||||||| | ||||| || || Sbjct 7686 GATGGCTATGTGGCGGCCTAATGAAAGCAAGGTATACCTGCCTCCAACACCTGTCTCAAA 7745 Query 5931 GGTGGTCAGCACAGATGAATATGTGCAACGTACCAACTACTTTTATCATGCCAGCAGTTC 5990 |||| |||| || |||| ||||| || || || | |||||||| | || || Sbjct 7746 GGTGCTCAGTACGGATGTCTATGTCACGCGGACGAATGTTTATTATCATGGTGGGAGCTC 7805 Query 5991 TAGGCTTTTGGCTGTTGGGCATCCATATTATACTATTAAGAA 6032 |||||| | | || || |||||||||||| |||| ||||| Sbjct 7806 TAGGCTCCTCACAGTAGGCCATCCATATTATTCTATAAAGAA 7847 Score = 80.6 bits (88), Expect = 1e-11 Identities = 116/164 (71%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 4509 TTATATCAAACATGTAAGGCCTCTGGGACATGCCCACCCGATGTAATTCCTAAGATTGAA 4568 ||||||| |||||| ||| |||| || ||||| || ||| | || |||| | | ||| Sbjct 6354 TTATATCGAACATGCAAGCAGGCTGGAACGTGCCCCCCTGATATCATACCTAGGGTGGAA 6413 Query 4569 GGTCGCACGTGGGCAGATCAAATATTAAAATGGGGCAGCACTGGTGTGTTTTTTGGGGGC 4628 ||| | || ||| |||| |||||||||||||| || || ||||| || ||| Sbjct 6414 CAGGACACATTAGCTGATAGAATACTAAAATGGGGCAGCCTAGGGGTCTTTTTCGGTGGC 6473 Query 4629 CTTGGCATAGGTACCGGTGCTGGGTCAGGTGGGCGCACAGGGTA 4672 || || |||||||| || || | || || |||||||| || Sbjct 6474 CTCGGTATAGGTACTGGAAGCGGCACTGGGGGACGCACAGGCTA 6517 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 25349499818800