Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_001593.1 Length=7856 Score E Sequences producing significant alignments: (Bits) Value seq8046 313 1e-81 >seq8046 Length=7925 Score = 313 bits (346), Expect = 1e-81 Identities = 740/1109 (67%), Gaps = 10/1109 (1%) Strand=Plus/Plus Query 1774 CCTCCAAAAATACGTAGCCCTGCGGTTGCATTATACTTTTATAAAACATCTATATCCAAC 1833 || |||||| || | || | | | ||| || |||| || || ||||| || || Sbjct 3664 CCACCAAAACTAAGAAGTACACCTGCTGCCTTGTACTGGTACAAGACATCCATGGGTAAT 3723 Query 1834 ATTAGTGACGTGTATGGGAGTACACCAGAATGGATAGAAAGACAAACACAGTTACAACAT 1893 ||||| || |||||| |||||||||||||||| ||||| |||| | || ||| Sbjct 3724 GGGAGTGAGGTCTATGGGGAGACACCAGAATGGATAGTGAGACAGACACTGATAGGACAC 3783 Query 1894 AGCTTTGAGGACTGTCAATTTGAACTATCTAAAATGGTGCAGTGGGCATTTGACAATGAA 1953 || | ||||| || || || ||||| |||||||||| |||| |||| |||| Sbjct 3784 AGTATGGAGGATGAGCAGTTCAAATTATCTGTCATGGTGCAGTACGCATATGACCATGAC 3843 Query 1954 GTAACCGATGATAGTCAAATAGCATTTCATTATGCACAGTTAGCAGATGTAGACAGTAAT 2013 |||| || || || | | |||||| | || |||||| | || || || ||| ||| Sbjct 3844 ATAACGGACGAGAGCGCACTGGCATTTGAGTACGCACAGCTGGCGGACGTGGACGCCAAT 3903 Query 2014 GCACAAGCATTTTTAAAAAGTAATATGCAAGCAAAATATGTAAAAGACTGTGGAATAATG 2073 || ||||||| |||| || || || || || || |||||||| | | |||| Sbjct 3904 GCGGCAGCATTTCTAAACAGCAACTGCCAGGCCAAGTACCTAAAAGACGCGGTGACAATG 3963 Query 2074 TGTAGACACTATAAACGGGCACAACAACAACAGATGAATATGAAACAATGGATAAAGCAT 2133 || |||||||| || || ||| | |||| |||| ||||| || ||||| || | Sbjct 3964 TGCAGACACTACAAGCGTGCAGAGAGGGAACAAATGAGTATGAGCCAGTGGATCAAATTT 4023 Query 2134 GTATGTAGCAAGGTGGATGATGGTGGGGACTGGAAGCCAATAGTACAGTTCCTAAGGTAT 2193 | | |||||| | || | || || |||||||| |||||| |||| ||||| || Sbjct 4024 AGAGGGAGCAAGATATCAGAGGAAGGAGATTGGAAGCCTATAGTAAAGTTTTTAAGGCAT 4083 Query 2194 CAAGGGGTCGAGTTTATTTCATTTTTAAGTTANNNNNNNNNNNNNNTACAAGGTACACCA 2253 || ||||| ||||| | ||||| | | || ||||| || Sbjct 4084 CAGGGGGTAGAGTTCGTGTCATTCCTTGCTGCCTTTAAGTCATTTTTAAAAGGTGTGCCC 4143 Query 2254 AAACATAATTGTTTAGTTATTTATGGTCCTCCAAACACGGGTAAATCATGTTT-TGCTAT 2312 || | ||||| |||| ||||||| ||| || | || || ||||||| ||| ||| || Sbjct 4144 AAGAAGAATTGCATAGTGTTTTATGGACCTGCAGATACAGGCAAATCATATTTCTGC-AT 4202 Query 2313 GAGTCTTATAAACTTTTTTCATGGGTCAGTCATTTCATATGTAAATTCACACAGTCACTT 2372 ||||||| | | || | ||| | || || ||||||| ||||| || ||||| Sbjct 4203 GAGTCTTTTGCAGTTCCTAGGTGGCGCTGTAATATCATATGCCAATTCCAGTAGCCACTT 4262 Query 2373 TTGGTTACAACCGTTAGACAATACTAAATTAGGTATGCTAGATGATGCCACAGAGGCATG 2432 |||| | || || |||| | | ||| |||| | || || ||||| || | || Sbjct 4263 TTGGCTGCAGCCCTTAGCTGACAGTAAGATAGGACTACTGGACGATGCGACGGCCCAGTG 4322 Query 2433 TTGGAAATATATTGATGAATACCTAAGAAATTTATTAGATGGCAATCCTGTAAGCTTAGA 2492 |||| ||||||||| ||| || || || || ||||||| || || | || |||| Sbjct 4323 CTGGACGTATATTGATACATATCTTAGGAACCTACTAGATGGAAACCCCTTCAGTATAGA 4382 Query 2493 TAGAAAACATAAGCAACTAGTACAAATAAAGTGTCCACCTGTACTAATAACAACTAATAT 2552 || ||||||||| || | || ||||| ||||| || || | |||||||| || || Sbjct 4383 CAGGAAACATAAGACCCTGCTGCAGATAAAATGTCCTCCATTAATGATAACAACCAACAT 4442 Query 2553 AAATCCAATGCAAGATGCAAAGCTACG-GTATTTGCACAGTAGAATACATGTGTTACAGT 2611 |||||| | | || | | || | |||||||| ||| ||| || |||| ||| Sbjct 4443 AAATCCTCTAGAGGAGG-ACAGATGGAAGTATTTGCGCAGCAGAGTAACACTGTTTAAGT 4501 Query 2612 TTTTAAATCCATTTCCAATTG-ATGTGAATGGAAATCCTGTATACCAATTAAATAATGCA 2670 || || |||||||| | | | | | || | || |||||| ||||||||||| Sbjct 4502 TTACCAACCCATTTCCCTTCGCAAGCCCAGGGGAGCCCC-TATACCCTATAAATAATGCA 4560 Query 2671 AACTGGAAATGtttttttGAAAGGACATGGTCCAGATTAGATTTGGATAACGACGAAGAC 2730 ||||||||||| ||||| ||||| | |||||| | |||| | | | || || Sbjct 4561 AACTGGAAATGCTTTTTCCAAAGGTCGTGGTCCCGCCTAGACCTAAACAGTCCAGAGGAT 4620 Query 2731 AAGGAAAACGATGGAGACGCTATGCCA-ACGTTTAGATGCGTGCCAGGAGAAAATTCTAG 2789 ||||| || ||||| || || || | |||||||||||||||||||||| | |||| Sbjct 4621 CAGGAAGACAATGGAAACACT-GGCGAGCCGTTTAGATGCGTGCCAGGAGACGTTGCTAG 4679 Query 2790 -ACTGTTTTGAAAGAGATAGCAAAAATATTACAGACCATATAGACTACTGGAAAGCTGTG 2848 |||| | ||||| ||||||||| || || ||||| || | | ||| || Sbjct 4680 AACTG-TATGAAAAAGATAGCAACAAACTTGAGGACCAAATTAAACATTGGGCGCAGGTC 4738 Query 2849 CGACAAGAAAATGTAATATATTATAAGGC 2877 || | ||||||||| || | | |||||| Sbjct 4739 CGGCTAGAAAATGTCATGTTGTTTAAGGC 4767 Score = 248 bits (274), Expect = 4e-62 Identities = 707/1075 (66%), Gaps = 44/1075 (4%) Strand=Plus/Plus Query 5877 CTCCCAGATCCTAATAAGTTTGGCCTTCCTGATACAAATATATTTAATCCTGACCAGGAG 5936 || || || || ||||||||||| || |||||| | || | | | |||| ||| || Sbjct 67 CTGCCGGACCCCAATAAGTTTGGTCTGCCTGATGCCAACCTCTATGATCCCGACACCCAG 126 Query 5937 CGGCTTGTATGGGCCTGTGTAGGGCTAGAGATTGGCCGTGGACAGCCTTTAGGTGTTGGT 5996 || || | ||||||||||| || | ||| | || ||||| |||||| | ||||| || Sbjct 127 CGTCTGCTGTGGGCCTGTGTCGGAGTTGAGGTGGGTCGTGGCCAGCCTCTGGGTGTGGGG 186 Query 5997 GTAAGTGGCCATCC--ACTGTTCAATAGGTTGGATGACACTGAAAGCTCTAGTATAGCTA 6054 || || || || ||| | || || ||||||| ||||||| | | | Sbjct 187 ATATCCGGTCACCCTTACTAT--AACAGACTGGATGATACTGAAAATGC------ACACA 238 Query 6055 TTCAGGATACTGCCCCGGACAGTAGGGATAATGTTTCAGTGGATCCTAAACAAACACAGT 6114 || || || || || | ||||| ||| | || ||||| |||||| |||||| Sbjct 239 ATCCCGACACAGCTGATGATGGGAGGGAGAATATATCCATGGATTATAAACAGACACAGC 298 Query 6115 TATGCATTATTGGCTGTGCACCCGCTATAGGTGAACACTGGACAAAGGGTACGGCCTGTC 6174 | | ||| | || || || ||||||||||||| ||| | ||||| || |||| Sbjct 299 TGTTTATTTTGGGATGCAAGCCTCCTATAGGTGAACATTGGTCCAAGGGCACTACCTGCA 358 Query 6175 GTTCCACACCTACTACAGCGGGCGACTGCCCCCCATTGGAACTTATCAATTCACCTATTG 6234 | || || || | || ||||| || || | | ||| || | |||||| Sbjct 359 GCGGGTCATCTGCT---GTTGGTGACTGTCCTCCCCTTCAGTTTACAAACACCACTATTG 415 Query 6235 AGGATGGAGACATGGTGGACACAGGTTTTGGTGCATTAAACTTTAAAGCTTTGCAGGAAT 6294 ||||||| || ||||| || || || || || || | | ||| ||| | ||| Sbjct 416 AGGATGGGGATATGGTTGAAACCGGGTTCGGGGCCCTGGATTTTGCCGCTCTACAGTCCA 475 Query 6295 CTAAATCTGATGTGCCATTGGATATT-GTACAATCCACATGTAAATATCCCGATTATTTG 6353 ||||||||||| || |||||||| |||| | | | |||||||||||| || ||| || Sbjct 476 ACAAATCTGATGTCCCCCTGGATATTTGTACTAAC-ATATGTAAATATCCGGACTATCTG 534 Query 6354 AAAATGAGTGCAGATGCCTATGGGGATTCTATGTGGTTTTATTTACGTAGGGAACAGTTG 6413 |||||| ||| || ||||||| |||||||||| |||| | || ||||| ||| || Sbjct 535 AAAATGGCTGCTGACCCCTATGGCGATTCTATGTTCTTTTCCCTGCGCAGGGAGCAGATG 594 Query 6414 TTTACCAGACAtttttttAATAGGGCAGGCGTTATTGGTGAGGAAATACCTAATGACTTA 6473 || ||| | |||||||||||| ||| || || ||||| | | || | || || Sbjct 595 TTCACCCGGCATTTTTTTAATCGGGGTGGGTCGATGGGTGACGCCCTCCCGGAGGAGCTA 654 Query 6474 TATATTAAGGGTAGTAATGGCAGGGACCCGCCCCCTAGCTCTGTATATGTTGCTACACCT 6533 ||| | || || || | | |||| ||| ||| | ||| || | || || Sbjct 655 TATGTCAAAAGTTCTACCGTC-CAGACC--CCCGGTAGTTATGTTTACACCTCCACTCCC 711 Query 6534 AGTGGGTCTATGATAACTTCAGAGGCTCAATTGTTTAATAAGCCATATTGGCTGCAACGT 6593 ||||| |||||| || | || || || || ||||| ||||| || ||||||| | | Sbjct 712 AGTGGCTCTATGGTATCCTCTGAACAGCAGTTATTTAACAAGCCTTACTGGCTGCGAAGG 771 Query 6594 GCCCAGGGACATAATAATGGCATCTGTTGGAACAATCAGTTATTTGTAACTGTTGTGGAT 6653 |||||||||||||| |||||||| || ||| ||||| | | || | || || ||||| Sbjct 772 GCCCAGGGACATAACAATGGCATGTGCTGGGGCAATCGGGTCTTCCTGACAGTGGTGGAC 831 Query 6654 ACCACCAGGAATACAAACATGACTCTTTCCGCAACCACACAGTCTATGTCTACATA---- 6709 ||||| | | |||| ||| |||||| | |||| ||| ||| | Sbjct 832 ACCACGCGCAGCACAA--ATGTCTCTTTGTG-TGCCAC--------TGTAAACACAGAAA 880 Query 6710 -TAATTCAAAG----CAAAT--TAAACAGTATGTTAGACATGCAGAGGAATATGAATTAC 6762 ||||| ||| | ||| ||| | || |||| ||| ||||| ||||| || | Sbjct 881 CTAATTATAAGGCCTCCAATTATAAGGAATACCTTAGGCATATGGAGGAGTATGATTTGC 940 Query 6763 AATTTGTGTTTCAACTATGTAAAATATCCCTGTCTGCTGAGGTTATGGCCTATTTACATA 6822 | || | |||||||| || |||||| | || | | ||| | ||||| || |||||| Sbjct 941 AGTTCATTTTTCAACTGTGCAAAATAACACTTACCCCCGAGATAATGGCATACATACATA 1000 Query 6823 CTATGAATTCTACCTTACTGGAAGACTGGAATATAGGTTTGTCGCCTCCTGTTGCCACTA 6882 ||| || | || || || |||||||| | ||| | | || || || | | Sbjct 1001 ACATGGATGCGCGGTTGCTTGAGGACTGGAACTTTGGTGTACCCCCGCCCCCGTCCGCCA 1060 Query 6883 GCTTAGAGGACAAATACAGATATGTGAAAAGTGC--AGCTATAACCTGTCAAAAG 6935 |||| | |||| ||||| ||| || ||| | ||| ||||| ||||| ||| Sbjct 1061 GCTTGCAAGACACCTACAGGTATCTG--CAGTCCCAAGCGATAACATGTCAGAAG 1113 Score = 140 bits (154), Expect = 2e-29 Identities = 139/180 (77%), Gaps = 0/180 (0%) Strand=Plus/Plus Query 5624 CGTCGTAAACGTATTCCCTATTTTCTTGCAGATGGCGGTGTGGCGGCCTAGTGACAGCAA 5683 || ||||||||| | | |||||| ||||||||||| |||||||||||| ||| ||||| Sbjct 7656 CGACGTAAACGTGTGCACTATTTCTTTGCAGATGGCTATGTGGCGGCCTAATGAAAGCAA 7715 Query 5684 GGTTTATCTGCCTCCTACCCCTGTATCAAAGGTCATTACAACGGATGCCTATGTAAAACG 5743 ||| || |||||||| || ||||| |||||||| | | ||||||| |||||| | || Sbjct 7716 GGTATACCTGCCTCCAACACCTGTCTCAAAGGTGCTCAGTACGGATGTCTATGTCACGCG 7775 Query 5744 CACCACTATATTTTATCATGCTGGAAGCTCTCGCTTGCTTACCGTGGGACATCCTTATTA 5803 || | | | | |||||||| ||| |||||| | | || || || || ||||| ||||| Sbjct 7776 GACGAATGTTTATTATCATGGTGGGAGCTCTAGGCTCCTCACAGTAGGCCATCCATATTA 7835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 25013638937920