Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq5929 102 1e-16 seq2380 95.1 1e-14 seq532 86.0 7e-12 seq2146 82.4 9e-11 >seq5929 Length=11024 Score = 102 bits (112), Expect = 1e-16 Identities = 217/318 (68%), Gaps = 12/318 (4%) Strand=Plus/Minus Query 53551 ACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAAT 53610 ||| |||||||||||||| | |||||| ||| | || ||| |||||| |||| | Sbjct 813 ACCAATAGGTCTATGTCTTTGATTAGAAGTTTTCGTCTCCAAAATGGGATAAAAATTGAC 754 Query 53611 ATCTATAATTTTATTGAGGTTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAG 53667 || |||| ||||| | || | |||| ||| |||| | || || ||||| Sbjct 753 GTCGATAACTTTATCCAAATTACGAGTGACGATT--TTTG-CAACTGTTTTAAGTTTATC 697 Query 53668 AAAATCAAA----TTGTCCATC-TATT-ACAAACATGTTCAATGCAATAGATGCCAGATT 53721 |||||| || |||| || |||| |||||||| || | ||||||||||||||||| Sbjct 696 AAAATCGAAAGTCTTGTTATTCGTATTCACAAACATATTGACAGCAATAGATGCCAGATT 637 Query 53722 ACAAACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACA 53781 ||| || || || || || | | ||||| || | || ||||| | ||| || || Sbjct 636 ACACACAGCAACTTCCCCAGGGCCAGAGTATTGAATAACTTCGGTGCACAAATTGCTGCA 577 Query 53782 CTTGATGGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 53841 ||||| || || | | || |||||| ||| || || |||||| ||||| || Sbjct 576 TTTGATTGTACCAATGTGCTGATGATTAGATTTTCGATTGCAGTGATCCTTGTAAAGCAT 517 Query 53842 GAATGGCGTACCAGTTTC 53859 | | || || |||||||| Sbjct 516 GTAAGGAGTTCCAGTTTC 499 >seq2380 Length=22946 Score = 95.1 bits (104), Expect = 1e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 54768 CACTAAATAGtttttttGTTTCTTTGTGTAGATTTGATACGGCTATTCTAGCGGCTAGAA 54827 ||||||| | || ||||||||||| || ||||| |||| ||| |||||||| |||| | Sbjct 21293 CACTAAAAATCTTCTTTGTTTCTTTATGCAGATTAGATATGGCAATTCTAGCTGCTAAAG 21234 Query 54828 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGTCAGAGTGTCCA 54887 | || ||||| | |||||| | | | | ||||| ||||| || | | |||||| Sbjct 21233 TTGCGTAATCTGCATGTTGATTGATCATACTTGCTGCAATTTCAGCCGCTAAGTTGTCCA 21174 Query 54888 ATTCTACCGTTGTTACTCCA 54907 |||| || |||||||||||| Sbjct 21173 ATTCAACTGTTGTTACTCCA 21154 >seq532 Length=46805 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 24633 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 24692 ||||| || | ||||||||||| ||| | |||||||| ||||| | ||||| ||| || Sbjct 27589 ACTTCCTCTATGGTCCAAAATGACGCCACAGCCTTTTTGTACATGTCCCAGACATCAGGA 27530 Query 24693 TATTGAATTGGAAAAATAACAAATCTATTTGG 24724 |||||||| || ||||| ||||| | |||||| Sbjct 27529 TATTGAATGGGGAAAATTACAAAGCGATTTGG 27498 Score = 86.0 bits (94), Expect = 7e-12 Identities = 118/165 (72%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 24425 ATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTC 24484 |||||| || |||||||| ||||| ||||| || || || ||||||||||| | || || Sbjct 27903 ATACATCTCAGAATGAATATTTTCTATGGCGATCTGGAAGCCGTAGAAACAACGTGCTTC 27844 Query 24485 GGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACT 24544 | || | || ||| || |||| || | ||| ||||| || ||||| || Sbjct 27843 CGCGATTTTCACCTCTTGACTGAATCTCTCAATCAGATTCTCATTAACGATTCCATCGGA 27784 Query 24545 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 24589 || ||||| |||||||| ||||| ||||| ||| ||||||| Sbjct 27783 AGCAGCAAAGAACGCCAAGACATGAGAGATAAAGTATCTTTCGTC 27739 >seq2146 Length=24533 Score = 82.4 bits (90), Expect = 9e-11 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 53384 CCTACATATGTATCGTATGGTCCTTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCA 53443 ||| |||||| || || || |||| || ||||| ||| ||||| || |||| ||| Sbjct 24271 CCTTCATATGACTCATAAGGACCTTTCTCGGTAGCTATTTCGCAACTGGCTTCTAGAGCA 24330 Query 53444 CCGTAATAAATGGTTTCGAAGATCTTCTTATTTAGATCTTGTGCTTCCAGGCTATCAAAT 53503 || ||||||| || || || || | |||| || || ||||| ||| |||||| Sbjct 24331 CCATAATAAAGAGTCTCAAAAATTTGAATATTGAGTTCACTAGCTTCTTTGCTTTCAAAT 24390 Query 53504 GGATAATTTAAGAGAATAAACGCGTCTGCTAATCCTTGAACACCAATACC 53553 || || | | | ||||| || |||||||||||||| |||| ||||| Sbjct 24391 GGGTATCTCATTAAGATAAATGCATCTGCTAATCCTTGTACACTGATACC 24440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593448458377920