Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_001619.1 Length=8607 Score E Sequences producing significant alignments: (Bits) Value seq8046 107 1e-19 >seq8046 Length=7925 Score = 107 bits (118), Expect = 1e-19 Identities = 296/444 (67%), Gaps = 10/444 (2%) Strand=Plus/Plus Query 1970 AGGTGATTGGAAGGAAGTTGTGAAATTTTTAAGACATCAAGGGATAGAATTTATTTTGTT 2029 ||| ||||||||| | || || |||||||| ||||| ||| |||| || | | || Sbjct 4047 AGGAGATTGGAAGCCTATAGTAAAGTTTTTAAGGCATCAGGGGGTAGAGTTCGTGTCATT 4106 Query 2030 TTTGGCAGACTTTAAAAGATTTTTGAGAGGTAGGCCTaaaaaaaaTTGCCTTGTATTCTG 2089 | || | |||||| |||||| | |||| ||| || || |||||| | || || | Sbjct 4107 CCTTGCTGCCTTTAAGTCATTTTTAAAAGGTGTGCCCAAGAAGAATTGCATAGTGTTTTA 4166 Query 2090 GGGTCCTCCAAATACAGGCAAGTCTATGTTT-TGCATGAGCCTGCTT-AGTTTTTTGCAC 2147 || ||| || |||||||||| || || ||| |||||||| || | |||| | | Sbjct 4167 TGGACCTGCAGATACAGGCAAATC-ATATTTCTGCATGAGTCTTTTGCAGTTCCTAGGT- 4224 Query 2148 GGAGTAGTTATTTCATATGTCAATAGCAAAAGTCATTTTTGGCTGCAACCTCTTA-CAGA 2206 || | || || ||||||| |||| || || || ||||||||||| || |||| | || Sbjct 4225 GGCGCTGTAATATCATATGCCAATTCCAGTAGCCACTTTTGGCTGCAGCC-CTTAGCTGA 4283 Query 2207 GGGGAAAATGGGTCTGTTAGATGATGCCACTAGGCC--TTGCTGGCTCTATATAGACACT 2264 | || || || || | || ||||| || |||| |||||| ||||| || || Sbjct 4284 CAGTAAGATAGGACTACTGGACGATGCGAC--GGCCCAGTGCTGGACGTATATTGATACA 4341 Query 2265 TATTTGAGAAATGCTCTAGATGGCAATACATTTAGTGTTGATTGCAAGCACAAAGCGCCT 2324 ||| | || || |||||||| || | || ||| | || | || || || | | Sbjct 4342 TATCTTAGGAACCTACTAGATGGAAACCCCTTCAGTATAGACAGGAAACATAAGACCCTG 4401 Query 2325 TTGCAACTAAAATGCCCGCCTCTGCTGATTACTACTAATGTCAATGTTTGTGGAGATGAA 2384 |||| ||||||| || || | |||| || || || | ||| | | || || Sbjct 4402 CTGCAGATAAAATGTCCTCCATTAATGATAACAACCAACATAAATCCTCTAGAGGAGGAC 4461 Query 2385 AAATTTAAATATCTTCGCAGCAGA 2408 | || || ||| | ||||||||| Sbjct 4462 AGATGGAAGTATTTGCGCAGCAGA 4485 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 27415843904976