Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_001676.1 Length=7759 Score E Sequences producing significant alignments: (Bits) Value seq8046 376 1e-100 >seq8046 Length=7925 Score = 376 bits (416), Expect = 1e-100 Identities = 746/1097 (68%), Gaps = 13/1097 (1%) Strand=Plus/Plus Query 5791 CCTAAAGTATCAGGATATCAATATAGGGTGTTTAGGGTGCAACTACCTGATCCTAATAAG 5850 || || ||||| || || || || | ||||| || | || || || || |||||| Sbjct 25 CCCAAGGTATCGGGCTACCAGTACCGTGTGTTCCATGTAAAGCTGCCGGACCCCAATAAG 84 Query 5851 TTTGGACTGCCTGATCCTAGTTTATATAATCCTGAGACACAACGCTTAGTATGGGCATGC 5910 ||||| ||||||||| | | | ||| |||| || || || || | | ||||| || Sbjct 85 TTTGGTCTGCCTGATGCCAACCTCTATGATCCCGACACCCAGCGTCTGCTGTGGGCCTGT 144 Query 5911 ACAGGTGTGGAGGTTGGTAGGGGCCAGCCATTGGGTCTTGGCCTAAGTGGTCATCCATTA 5970 || || ||||| ||| | |||||||| ||||| | || || ||||| || ||| Sbjct 145 GTCGGAGTTGAGGTGGGTCGTGGCCAGCCTCTGGGTGTGGGGATATCCGGTCACCC-TTA 203 Query 5971 TTA-AATAAATTGGATGATACTGAAAATGCACCTAAATATGTTGGTGCAGGAGCTGACAA 6029 || || | | ||||||||||||||||||||| || | | ||| | ||| Sbjct 204 CTATAACAGACTGGATGATACTGAAAATGCACACAA---TCCCGACACAGCTGATGATGG 260 Query 6030 TAGGGAAAATGTTAGCATGGACTATAAACAAACACAGTTATGTATTTTGGGCTGCACACC 6089 ||||| ||| | |||||| |||||||| |||||| | | ||||||||| |||| || Sbjct 261 GAGGGAGAATATATCCATGGATTATAAACAGACACAGCTGTTTATTTTGGGATGCAAGCC 320 Query 6090 ACCTATAGGTGAACACTGGGCTAAAGGCAACCTATGTACACCTAATACATTGGCTGCTGG 6149 |||||||||||||| ||| | || |||| ||| | || | | ||| |||| ||| Sbjct 321 TCCTATAGGTGAACATTGGTCCAAGGGCA--CTACCTGCAGCGGGT-CATCTGCTGTTGG 377 Query 6150 TGACTGTCCTCCTTTGGAATTAGTAAATTCATATATACAGGATGGTGATATGGTAGATAT 6209 |||||||||||| | | || ||| | ||| ||||||| |||||||| || | Sbjct 378 TGACTGTCCTCCCCTTCAGTTTACAAACACCACTATTGAGGATGGGGATATGGTTGAAAC 437 Query 6210 AGGATTTGGGGCTATGGATTTTAAAACCCTACAAACCTCAAAAAGTGAGGTACCCCTTGA 6269 || || ||||| |||||||| | ||||| || ||| ||| || ||||| || Sbjct 438 CGGGTTCGGGGCCCTGGATTTTGCCGCTCTACAGTCCAACAAATCTGATGTCCCCCTGGA 497 Query 6270 TGTAGCTACCTCAATTTGTAAATATCCTGATTACCTTAAAATGGCTGCAGAGGCATATGG 6329 | | ||| || ||||||||||| || || || ||||||||||| || | ||||| Sbjct 498 TATTTGTACTAACATATGTAAATATCCGGACTATCTGAAAATGGCTGCTGACCCCTATGG 557 Query 6330 GGACAGTTTAtttttttACTTAAGGCGGGAACAAATGTTTGTTAGGCATATGTTAAATAG 6389 || | | || |||| | | | |||| || ||||| ||||| | || ||| | Sbjct 558 CGATTCTATGTTCTTTTCCCTGCGCAGGGAGCAGATGTTCACCCGGCATTTTTTTAATCG 617 Query 6390 GGCAGGTACCATGGGTGAGCCTGTACCTAATGACTTATACATTAAGAAATCCTCAGGT-- 6447 || || | |||||||| | | || | || |||| | || || | || || Sbjct 618 GGGTGGGTCGATGGGTGACGCCCTCCCGGAGGAGCTATATGTCAA-AAGTTCTACCGTCC 676 Query 6448 --AACCTTGACAGTTCTATTTATGCTGCAACTCCTAGTGGCTCTATGGTAACATCTGAAT 6505 | || | |||| | |||| | | ||||| ||||||||||||||| | |||||| Sbjct 677 AGACCCCCGGTAGTTATGTTTACACCTCCACTCCCAGTGGCTCTATGGTATCCTCTGAAC 736 Query 6506 ACCAAATATTTAATAAGCCATACTGGTTACAACGGGCCCAGGGTCAAAACAATGGTATTT 6565 | || ||||||| ||||| |||||| | | | |||||||||| || |||||||| || | Sbjct 737 AGCAGTTATTTAACAAGCCTTACTGGCTGCGAAGGGCCCAGGGACATAACAATGGCATGT 796 Query 6566 GTTGGGGCAATCAGGTGTTTTTAACAGTTGTAGATACCACCCGTAGTACTAACCTAACAT 6625 | |||||||||| ||| || | ||||| || || ||||| || || || || | | | Sbjct 797 GCTGGGGCAATCGGGTCTTCCTGACAGTGGTGGACACCACGCGCAGCACAAATGTCTCTT 856 Query 6626 TGTGTGCTACAGCATCCACGCAGGATAGCTTTAATAATTCTGACTTTAGGGAGTATATTA 6685 ||||||| || | | ||| | || | ||| || | | || ||| || ||| Sbjct 857 TGTGTGCCACTGTAAACACAGAAACTAATTATAAGGCCTCCAATTATAAGGAATACCTTA 916 Query 6686 GACATGTGGAGGAATATGATTTACAGTTTATATTTCAGTTATGTACCATAACCCTTACAG 6745 | ||| ||||||| |||||||| ||||| || ||||| | || | ||||| ||||| Sbjct 917 GGCATATGGAGGAGTATGATTTGCAGTTCATTTTTCAACTGTGCAAAATAACACTTACCC 976 Query 6746 CAGATGTTATGGCCTATATTCATGGAATGAATCCCACTATTCTAGAGGACTGGAACTTTG 6805 | || | ||||| || || ||| ||| || | | || |||||||||||||||| Sbjct 977 CCGAGATAATGGCATACATACATAACATGGATGCGCGGTTGCTTGAGGACTGGAACTTTG 1036 Query 6806 GTATAAcccccccAGCTACAAGTAGTTTGGAGGACACATATAGGTTTGTACAGTCACAGG 6865 || || |||| || | | || ||| | ||||| || |||| | | ||||| || | Sbjct 1037 GTGTACCCCCGCCCCCGTCCGCCAGCTTGCAAGACACCTACAGGTATCTGCAGTCCCAAG 1096 Query 6866 CCATTGCATGTCAAAAG 6882 | || ||||||| ||| Sbjct 1097 CGATAACATGTCAGAAG 1113 Score = 232 bits (256), Expect = 3e-57 Identities = 725/1111 (65%), Gaps = 23/1111 (2%) Strand=Plus/Plus Query 1938 AATGCGGCTGCCTTTCTAGGAAGTAATTGTCAAGCTAAGTATGTAAAAGACTGTGGAACA 1997 |||||||| || |||||| || || || || || ||||| |||||||| | ||| Sbjct 3901 AATGCGGCAGCATTTCTAAACAGCAACTGCCAGGCCAAGTACCTAAAAGACGCGGTGACA 3960 Query 1998 ATGTGTAGACATTATATAAGGGCACAAAAAATGCAAATGACAATGTCACAATGGATTAAA 2057 ||||| ||||| || | | ||| | | ||||||| ||| || ||||| ||| Sbjct 3961 ATGTGCAGACACTACAAGCGTGCAGAGAGGGAACAAATGAGTATGAGCCAGTGGATCAAA 4020 Query 2058 CATCGTTGTGATTTAG-TAGAGGAGGAAGGTGAGTGGAAGGAAATAGTACGATTCCTTAG 2116 | | | || || || |||||||| || |||||| |||||| || | || Sbjct 4021 TTTAGAGG-GAGCAAGATATCAGAGGAAGGAGATTGGAAGCCTATAGTAAAGTTTTTAAG 4079 Query 2117 ATATCAACATGTGGATTTTATATCTTTTATGATAGCATTAAAACAATTTTTACAAGGCAT 2176 |||| || || || | || || | || || || ||||||| |||| | Sbjct 4080 GCATCAGGGGGTAGAGTTCGTGTCATTCCTTGCTGCCTTTAAGTCATTTTTAAAAGGTGT 4139 Query 2177 ACCAAAACACAATTGTATATTACTGTATGGACCTCCAGACACAGGAAAATCTAATTTTGC 2236 || || | ||||| ||| | | ||||||||| |||| ||||| ||||| |||| Sbjct 4140 GCCCAAGAAGAATTGCATAGTGTTTTATGGACCTGCAGATACAGGCAAATCATATTTCTG 4199 Query 2237 CATGAGTTTAATTAGCTTTT--TAGGAGGTGTAGTGCTATCATATGTTAATTCTAGTAGC 2294 ||||||| | || || || |||| || | || ||||||||| ||||| |||||| Sbjct 4200 CATGAGTCT--TTTGCAGTTCCTAGGTGGCGCTGTAATATCATATGCCAATTCCAGTAGC 4257 Query 2295 CATTTTTGGTTAGAACCTTTGGCAGATGCCAAAATAGCTATGCTAGACGATGCTACAACA 2354 || |||||| | | || || || || || |||| | || |||||||| || | Sbjct 4258 CACTTTTGGCTGCAGCCCTTAGCTGACAGTAAGATAGGACTACTGGACGATGCGACGGCC 4317 Query 2355 CAATGCTGGAACTATATGGACATTTATATGCGCAATGCATTAGATGGCAATCCTATGTGC 2414 || ||||||| ||||| || | ||| | | || | ||||||| || || | | Sbjct 4318 CAGTGCTGGACGTATATTGATACATATCTTAGGAACCTACTAGATGGAAACCCCTTCAGT 4377 Query 2415 TTTGATAGAAAACATCGAGCTATGGTGCAAACAAAATGTCCTCCACTAATAGTGACCTCC 2474 | || || |||||| | || |||| | ||||||||||||| |||| | || || Sbjct 4378 ATAGACAGGAAACATAAGACCCTGCTGCAGATAAAATGTCCTCCATTAATGATAACAACC 4437 Query 2475 AACATAAATGCTAGTACA-GACGACAGATGGCGCTACCTACACAGTAGAGTAA-AATGTT 2532 ||||||||| || || | || ||||||||| || | | ||| ||||||| | |||| Sbjct 4438 AACATAAATCCT-CTAGAGGAGGACAGATGGAAGTATTTGCGCAGCAGAGTAACACTGTT 4496 Query 2533 TTTGTTTTCCCAATAGATTTCCATTTGATAGTAATGGAAACCCTGTGTATGATTTAAGTA 2592 | | ||| |||| |||||| || | || || | || | || | ||| || Sbjct 4497 TAAG-TTTACCAACCCATTTCCCTTCGCAAGCCCAGGGGAGCCCCTATACCCTATAAATA 4555 Query 2593 ATAAAAATTGGAAATCATTCTTTAAAAGGTCATGGTCACGTTTAGCGCTGAACGACNNNN 2652 || ||| ||||||| || || ||||||| ||||| || ||| || | || Sbjct 4556 ATGCAAACTGGAAATGCTTTTTCCAAAGGTCGTGGTCCCGCCTAGACCTAA---ACAGTC 4612 Query 2653 NNNNNNNNNNNNNNNNNNATGGAGACCCTAGCAACACGTTTAGATGTGTGCCAGGAAAGG 2712 ||||| || || || | |||||||||| ||||||||| | | Sbjct 4613 CAGAGGATCAGGAAGACAATGGAAACACTGGCGAGCCGTTTAGATGCGTGCCAGGAGACG 4672 Query 2713 CTTCTAGACCTATATGAAAAAGATAGTAATAAACTAGAGGACCAAATAGAACATTGGAAA 2772 | ||||| || |||||||||||||| || ||||| ||||||||||| |||||||| Sbjct 4673 TTGCTAGAACTGTATGAAAAAGATAGCAACAAACTTGAGGACCAAATTAAACATTGG--G 4730 Query 2773 TGCA--TACGCCTGGAGTGTGCATTGCAATACAAAGCCCGGGAA-ATGGGATACAAAGTG 2829 ||| | || || || || || | || || |||||| ||| || | | | Sbjct 4731 CGCAGGTCCGGCTAGAAAATGTCATGTTGTTTAAGGCTCGGGAATGTGGAATGACACGAG 4790 Query 2830 T-TACAGCACCAGGCACTGCCTGCACTTGCTGTGTCAAAGGGCAAAGGGCACAAGGCCAT 2888 | | | || | || |||| || || | ||||| || | |||| ||||||| Sbjct 4791 TCGGCTGTACAA--CAGTGCCCGCCCTCACCGTGTCGAAAGCTAAAGCTTGTCAGGCCAT 4848 Query 2889 TGAACTGCAACTTGCATTAGAGACATTGCAAAAGACAGTATACAGCACCGAACCGTGGAC 2948 || |||| || |||||| |||||||| ||| | ||| ||||| || | ||||| Sbjct 4849 AGAGGTGCAGCTGGCATTACAGACATTGATGCAGAGTGCATATAGCACGGAGGCATGGAC 4908 Query 2949 ATTACAGGACACATGCCTGGAACGGTGGAATGCACCACCAACTGGTTGCT-TAAAAAGAC 3007 | | ||||| |||||||| |||| | ||||| |||| | |||| ||||||| Sbjct 4909 CCTGCGAGACACGTGCCTGGAGATGTGGGAAGCACCTCCAAAGAGATGCTGGAAAAAGA- 4967 Query 3008 GTGGACAAACAGTAGATGTTATATTTGATGG 3038 |||||| ||||| || | |||||||| Sbjct 4968 AAGGACAATCAGTATTAGTAAAGTTTGATGG 4998 Score = 140 bits (154), Expect = 2e-29 Identities = 212/298 (71%), Gaps = 9/298 (3%) Strand=Plus/Plus Query 5531 TGGTGGGGATTTTTACCTGCATCCTAGTTATACTTATGTACGC-AAACGCCGTAAACGTT 5589 ||| || |||| ||| ||| || |||||| || ||| | ||||| ||||||||| Sbjct 7610 TGGGGGTGATTACTACTTGCTGCCAAGTTATG-TTCTGTGGCCTAAACGACGTAAACGTG 7668 Query 5590 TCCCATATTTTCTTGCAGATGGCTATGTGGCGGCCTAGCGAAAACAAAGTATACCTGCCT 5649 | | ||||| ||||||||||||||||||||||||| |||| ||| |||||||||||| Sbjct 7669 TGCACTATTTCTTTGCAGATGGCTATGTGGCGGCCTAATGAAAGCAAGGTATACCTGCCT 7728 Query 5650 CCTACCCCAGTTTCTAAGGTTGTCAGCACGGATGAATATGTGACTCGCACAAGCATATAC 5709 || || || || || ||||| |||| ||||||| ||||| || || || | | || Sbjct 7729 CCAACACCTGTCTCAAAGGTGCTCAGTACGGATGTCTATGTCACGCGGACGAATGTTTAT 7788 Query 5710 TATCATGCAAGCAGCTCTAGATTATTGGCTGTTGGACATCCATAT-----TTTAAAGTAC 5764 ||||||| | |||||||| | | | || || ||||||||| | ||||| Sbjct 7789 TATCATGGTGGGAGCTCTAGGCTCCTCACAGTAGGCCATCCATATTATTCTATAAAG--A 7846 Query 5765 AAAAAACCAATAATAAGCAAAGTATTCCTAAAGTATCAGGATATCAATATAGGGTGTT 5822 |||| | || ||||||| | | || || ||||| || || || || | ||||| Sbjct 7847 AAAATAGCACTAATAAGGTGTCTGTACCCAAGGTATCGGGCTACCAGTACCGTGTGTT 7904 Score = 107 bits (118), Expect = 9e-20 Identities = 144/198 (73%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 4236 CGCCGGAAACGTGCATCTGCAACACAATTATATCAAACATGCAAGGCCTCTGGCACATGC 4295 || ||||| || || || | || | ||||||| |||||||||| |||| || ||| Sbjct 6327 CGTCGGAAGCGCGCCTCCCCCACGGACTTATATCGAACATGCAAGCAGGCTGGAACGTGC 6386 Query 4296 CCTTCAGATGTAATTCCTAAGGTAGAGG-GTACAACTATAGCAGATCAAATCCTACGATG 4354 || | ||| | || |||| ||| || | ||| | |||| ||| ||| ||| ||| Sbjct 6387 CCCCCTGATATCATACCTAGGGTGGAACAGGACACAT-TAGCTGATAGAATACTAAAATG 6445 Query 4355 GGGCAGTATGGGCGTGTTTTTTGGGGGCTTGGGAATAGGTACTGGTAGTGGCACAGGGGG 4414 |||||| | || || ||||| || ||| | || ||||||||||| || ||||| ||||| Sbjct 6446 GGGCAGCCTAGGGGTCTTTTTCGGTGGCCTCGGTATAGGTACTGGAAGCGGCACTGGGGG 6505 Query 4415 CCGCACAGGGTATATACC 4432 |||||||| || ||||| Sbjct 6506 ACGCACAGGCTACATACC 6523 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 24703367457488