Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_001901.1 Length=46375 Score E Sequences producing significant alignments: (Bits) Value seq13651 131 5e-26 seq680 80.6 8e-11 >seq13651 Length=3921 Score = 131 bits (144), Expect = 5e-26 Identities = 252/369 (68%), Gaps = 2/369 (1%) Strand=Plus/Minus Query 42993 CAGTTTTTGGATGAGAAAGAGGGAAATAGCCTTACTGCTTACAAAGATGGCAGCGGCATC 43052 |||||| ||| |||||||| || | |||| || || ||| | || || || ||| Sbjct 3462 CAGTTTCAGGAAGAGAAAGAAGGTCAGCGCCTGACCGCATACCAGGACGGTGTTGGAATC 3403 Query 43053 TGGACGATATGCCGTGGTGCCACAATGGTTGATGGCAAGCCAGTAATGCAGGGCATGAAG 43112 ||||| || ||| | || | || ||||| | ||| || || || |||| | Sbjct 3402 TGGACAATTTGCGGCGGCGTGACGATGGTCAACGGCCAGAAGGTTGTGAAGGGGCAGCGC 3343 Query 43113 TTGAC-GCAGGCCAAATGCAATCAGGTAAACGCCATCGAACGCAATAAGGCTCTTGCGTG 43171 |||| || | || ||||| ||| | |||| || | || |||||||| | || Sbjct 3342 CTGACCGCCGAGCAG-TGCAAGCAGATTGACGCAGCAGAGCAGAAAAAGGCTCTCGACTG 3284 Query 43172 GGTTGACCGCAATATCAAAGTTCCTCTGACCGAACCGCAGAAAGCCGGTATCGCATCTTT 43231 ||| |||||||| |||| || | ||||||||||| || |||| |||||||| || || Sbjct 3283 GGTAGACCGCAACGTCAAGGTAACGCTGACCGAACCTCAAAAAGTTGGTATCGCCTCATT 3224 Query 43232 CTGCCCGTACAACATAGGCCCAGGCAAATGCTTCCCATCGACGTTCTATAAGCGTCTTAA 43291 ||| |||| ||||| ||||| || ||||||||| | || || || || ||| || || Sbjct 3223 CTGTCCGTGGAACATCGGCCCTGGAAAATGCTTCACCTCCACCTTTTACAAGAAGCTGAA 3164 Query 43292 TGCTGGCGACCGCCACGGGGCTTGTGAGGCGATCCGATGGTGGATAAAGGATGGTGGCCG 43351 || ||||||||| || || || | ||||| | |||||| | || | |||||| Sbjct 3163 CGCCGGCGACCGCATTGGTGCCTGCCGAGAAATCCGCCGCTGGATATACGACGCTGGCCG 3104 Query 43352 CGACTGTCG 43360 || || || Sbjct 3103 AGATTGCCG 3095 >seq680 Length=42727 Score = 80.6 bits (88), Expect = 8e-11 Identities = 107/149 (72%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 10529 AAGGCGGGTATTTCAGTGGGTCAGTATAACGCAGCGATGCGTATGCTCCCGGCGCAGTTT 10588 || || |||||||| || || ||||| |||||||||||| ||| ||||| | Sbjct 1619 AAAGCCGGTATTTCTGTCGGCCAGTACCGCGCAGCGATGCGGCAGCTTGGCCCGCAGATC 1678 Query 10589 ACTGACGTGGCCACGCAGCTTGCGGGTGGGCAGAACCCCTGGCTGATTCTGCTTCAGCAG 10648 || ||| | | |||||||| || ||||| ||||| | ||||||| | |||||| Sbjct 1679 ACCGACATCGTAACGCAGCTGCAAGGCGGGCAAAACCCGTTTACGATTCTGGTGCAGCAG 1738 Query 10649 GGCGGTCAGGTTAAGGACTCCTTTGGCGG 10677 ||||| ||| | || |||||||| || || Sbjct 1739 GGCGGCCAGATCAAAGACTCCTTCGGGGG 1767 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 148213595295976