Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_001962.1 Length=128413 Score E Sequences producing significant alignments: (Bits) Value seq1592 104 2e-17 seq2779 102 7e-17 seq1483 89.7 4e-13 >seq1592 Length=29089 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 25035 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 25094 |||||||| ||| ||||||| |||||||| ||||| ||||| ||| || | || Sbjct 413 ATGCAAATTTTCGTCAAAACCTTGACGGGAAAAACTATTACTTTGGAAGTAGAGGCTTCA 354 Query 25095 GAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 25154 || ||| | | || |||| |||||| || |||||||| | || ||||| Sbjct 353 GATACGATCGAGAATGTCAAAGCCAAAATTCAAGACAAAGAAGGCATCCCTCCGGATCAG 294 Query 25155 CAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAAT 25214 || ||| | || || |||||||| || |||| || || || ||||||||||| Sbjct 293 CAGAGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAAT 234 Query 25215 ATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 |||||||||||||| ||||| || | || || ||| | || ||||| Sbjct 233 ATTCAAAAGGAATCCACTCTGCATTTAGTTTTGCGACTTCGCGGAGG 187 Score = 87.8 bits (96), Expect = 1e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || || ||||||| |||||||| || ||||| || || ||| | | Sbjct 642 AATGCAGATCTTTGTCAAAACCTTGACGGGAAAGACCATCACATTGGAGGTTGAAGCTTC 583 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| ||| | | || |||| |||||| ||||||||||| | ||| |||||| Sbjct 582 AGACACGATCGAGAATGTCAAAGCGAAAATTCAGGATAAAGAAGGCATCCCCCCAGATCA 523 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 |||||| | |||||||| || ||||| | ||||| | || | |||| ||||| Sbjct 522 GCAAAGATTGATCTTTGCTGGAAAACAGCTTGAAGACGGCCGCACGCTTTCCGACTACAA 463 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||| || || || ||| | ||| |||| | || |||| || || Sbjct 462 CATTCAGAAAGAGTCAACTTTGCACTTGGTTCTTCGTCTACGTGGTGG 415 >seq2779 Length=20704 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || || | ||||| | || |||||||||||||| ||| ||| | | Sbjct 8376 AATGCAGATCTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTC 8317 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | | | || |||||| || |||||||| | || ||||| Sbjct 8316 AGACACCATCGAGAACGTAAAAGCAAAAATCCAGGACAAAGAAGGAATTCCTCCCGATCA 8257 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 ||| | || || ||||| || || || |||||||| || |||| | ||||||| || Sbjct 8256 GCAACGTCTCATTTTTGCCGGTAAGCAGCTGGAAGATGGCAGAACTCTTTCCGATTATAA 8197 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGGG 25262 |||||||||||||||||| |||||| | || || ||| | || |||||| Sbjct 8196 TATTCAAAAGGAATCTACACTTCACTTAGTTTTGCGACTTCGCGGAGGG 8148 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 25034 AATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGC 25093 |||||| || || | || || | || ||||||||||| ||| ||| ||| | | Sbjct 8604 AATGCAGATCTTTGTAAAGACTCTCACAGGCAAAACCATCACCCTTGAAGTTGAAGCTTC 8545 Query 25094 AGAGACGGTGGCCGATCTCAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCA 25153 ||| || | | || | ||| ||||| || ||||| || | ||| ||||| Sbjct 8544 AGATACCATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCA 8485 Query 25154 ACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGATTACAA 25213 || | || || || || ||||||||| | |||||| || |||| | |||||||||| Sbjct 8484 GCAGCGTCTGATTTTCGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGATTACAA 8425 Query 25214 TATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||| || |||||||| || ||||| |||| | || | || ||||| Sbjct 8424 TATCCAGAAGGAATCCACGCTTCATCTGGTCCTGCGTCTTCGTGGAGG 8377 >seq1483 Length=30179 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Minus Query 25148 AGATCAACAAAGACTTATCTTTGCGGGCAAACAATTGGAAGATTCCAAAACTATGGCCGA 25207 |||||| |||||| | |||||||| ||||| |||||||||||| | ||| | |||| Sbjct 23362 AGATCAGCAAAGATTGATCTTTGCTGGCAAGCAATTGGAAGATGGTAGGACTTTATCCGA 23303 Query 25208 TTACAATATTCAAAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 25261 ||||||||||| || |||||||| | ||| |||| | || || ||||| || Sbjct 23302 CTACAATATTCAGAAAGAATCTACCTTGCACTTGGTACTGCGCTTGCGAGGTGG 23249 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 410612537608856