Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq2779 132 5e-26 seq1592 111 2e-19 seq532 109 6e-19 seq121 100 3e-16 seq12857 89.7 5e-13 >seq2779 Length=20704 Score = 132 bits (146), Expect = 5e-26 Identities = 159/216 (74%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || ||||| || ||||| ||||||||||||||| | || || ||||| | Sbjct 8604 AATGCAGATCTTTGTAAAGACTCTCACAGGCAAAACCATCACCCTTGAAGTTGAAGCTTC 8545 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | ||| | |||| ||||| | ||||||||||| || ||| |||| || Sbjct 8544 AGATACCATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCA 8485 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || || || | ||| |||||||| || || || | | || || ||| ||||| Sbjct 8484 GCAGCGTCTGATTTTCGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGATTACAA 8425 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||| ||||||| ||||| || |||| Sbjct 8424 TATCCAGAAGGAATCCACGCTTCATCTGGTCCTGCG 8389 Score = 113 bits (124), Expect = 5e-20 Identities = 154/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| ||||| || |||||||||||| | || || ||||| | Sbjct 8831 ATGCAAATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTTGAGGTAGAAGCTTCT 8772 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | || | || |||| ||||| || ||||| || | || ||| Sbjct 8771 GACACTATAGAGAATGTTAAAGCCAAGATTCAAGACAAGGAAGGCATTCCACCTGATCAG 8712 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || || ||||||||||| || | | || || ||| ||||| Sbjct 8711 CAGCGCCTGATCTTTGCCGGAAAACAGCTGGAAGATGGCAGAACTCTTTCCGATTACAAT 8652 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||||||| |||| || ||||| || |||| Sbjct 8651 ATCCAGAAGGAATCCACACTTCATCTGGTCCTGCG 8617 Score = 98.7 bits (108), Expect = 1e-15 Identities = 164/233 (70%), Gaps = 7/233 (3%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || ||||| || || ||||||||||| || | || |||||||| | Sbjct 8376 AATGCAGATCTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTC 8317 Query 40749 CGACAGCGT-GCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| | || | |||||| | |||||||| || || || | || | Sbjct 8316 AGACACCATCGAGAACG-TAAAAGCAAAAATCCAGGACAAAGAAGGAATTCCTCCCGATC 8258 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 ||||||| ||||| | || || || |||||||| || | | || || ||| || | Sbjct 8257 AGCAACGTCTCATTTTTGCCGGTAAGCAGCTGGAAGATGGCAGAACTCTTTCCGATTATA 8198 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG-CTT----GAGGGGCG 40915 | || || ||||| | || || || |||| ||||| ||| |||||||| Sbjct 8197 ATATTCAAAAGGAATCTACACTTCACTTAGTTTTGCGACTTCGCGGAGGGGCG 8145 >seq1592 Length=29089 Score = 111 bits (122), Expect = 2e-19 Identities = 147/204 (72%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || || || ||||| | ||||| || |||||||| | || || ||||| | Sbjct 642 AATGCAGATCTTTGTCAAAACCTTGACGGGAAAGACCATCACATTGGAGGTTGAAGCTTC 583 Query 40749 CGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | | |||| | ||||||| || ||||| ||||||||| | || || Sbjct 582 AGACACGATCGAGAATGTCAAAGCGAAAATTCAGGATAAAGAAGGCATCCCCCCAGATCA 523 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||| || | |||| || || |||||||| || |||| ||||| || ||||||||| Sbjct 522 GCAAAGATTGATCTTTGCTGGAAAACAGCTTGAAGACGGCCGCACGCTTTCCGACTACAA 463 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||| ||| | || |||| Sbjct 462 CATTCAGAAAGAGTCAACTTTGCA 439 Score = 104 bits (114), Expect = 2e-17 Identities = 136/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || ||||| || ||||||||||| | || ||||| || | Sbjct 185 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAAACCATCACATTGGAAGTCGAGGCATCT 126 Query 40750 GACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | || || | |||| | ||||||| |||||||| ||||| || |||| || Sbjct 125 GATACGATTGAGAATG-TCAAAGCCAAAATTCAAGACAAAGAAGGCATTCCTCCGGATCA 67 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | ||||||||| |||||||| |||| |||||| | ||| ||||| Sbjct 66 GCAGAGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAA 7 Query 40869 CATCCA 40874 || || Sbjct 6 TATTCA 1 Score = 96.9 bits (106), Expect = 4e-15 Identities = 149/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || || || || || | || || ||||| || || |||| || |||||| | Sbjct 869 ATGCAGATTTTTGTGAAGACATTAACTGGAAAAACTATAACTCTCGAAGTTGAAGCCTCT 810 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 |||| | | |||| | |||| || |||| ||||||||||| || || | ||||| Sbjct 809 GACACTATCGAGAACG-TAAAGGCGAAGATTCAGGACAAAGAGGGTATTCCACCTGACCA 751 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 ||| || | || | ||| || |||||||| || |||| || ||| | ||| ||||| Sbjct 750 GCAGCGCTTGATTTTCGCCGGGAAACAGCTTGAAGACGGACGTACCTTGTCCGATTACAA 691 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 || |||||||| |||| || ||||| || Sbjct 690 TATTCAGAAGGAATCCACTCTCCATCTGGT 661 >seq532 Length=46805 Score = 109 bits (120), Expect = 6e-19 Identities = 159/222 (72%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 116945 TTGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGC 117004 ||||| || || || |||||| | || ||||| | |||||||| | ||||| | | Sbjct 28238 TTGTTTAATGCAATTGAGACGCTTCCTTGCGTGGGAAAGAAGGCCAATTGGGCATTAAAC 28297 Query 117005 TGGATCGCCGGCAGAGAG-GCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGA 117063 |||||| | || || || | || ||||| | || || |||||||| ||||| Sbjct 28298 TGGATCAATCAC-GACAGCGCTACATTTCCTGAGCGTGTAGTTGCGTTCGCGGCGGTCGA 28356 Query 117064 GGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCAT 117123 || ||||||| ||||||||||| | || || ||||| |||||||| || |||| Sbjct 28357 AGGTATCTTCTTCAGTGGCAGTTTCGCTTCAATCTTCTGGCTGAAGAAACGAGGAGTCAT 28416 Query 117124 GCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGA 117165 ||| || || || ||||||||||| |||||||| | ||||| Sbjct 28417 GCCAGGTCTCACCTTCAGCAACGAACTCATCTCACGAGACGA 28458 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 116760 TGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTC 116819 |||| || || || || ||| || ||||| || ||||||||| | ||| | ||| || Sbjct 27767 TGGCGTTCTTTGCTGCTTCCGATGGAATCGTTAATGAGAATCTGATTGAGAGATTCAGTC 27826 Query 116820 AGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACG 116879 | |||||| | | || || || || || ||||||||||| ||||||||||| || || Sbjct 27827 AAGAGGTGAAAATCGCGGAAGCACGTTGTTTCTACGGCTTCCAGATCGCCATAGAAAATA 27886 Query 116880 TGCACTCGGAAATGTATTCGACCCTCATCGACACGTA 116916 | || || || |||||||| |||||||| || || Sbjct 27887 TTCATTCTGAGATGTATTCCTTACTCATCGAAACTTA 27923 >seq121 Length=74473 Score = 100 bits (110), Expect = 3e-16 Identities = 135/188 (72%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| ||||| ||||| || |||||||| || |||| || |||||| | Sbjct 8310 ATGCAGATTTTCGTCAAAACCCTCACTGGTAAAACCATTACTCTCGAGGTAGAAGCCTCT 8251 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | ||| | || | || |||| || |||||||| || || | || ||| Sbjct 8250 GATACCATCGAAAATGTGAAAGCCAAGATTCAGGATAAAGAGGGAATTCCACCAGATCAG 8191 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || ||||| |||| || || ||||||||||| || | || || ||| || || ||| Sbjct 8190 CAGCGACTTATCTTTGCTGGAAAACAGCTGGAAGATGGACGTACTCTCTCTGATTATAAC 8131 Query 40870 ATCCAGAA 40877 ||||| || Sbjct 8130 ATCCAAAA 8123 >seq12857 Length=4317 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| ||||| ||||| | || || ||||| ||||| | || || || || | Sbjct 3816 ATGCAAATTTTCGTCAAAACTTTGACAGGAAAAACTATCACTTTGGAGGTAGAGGCTTCG 3757 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| ||||||| |||||||||||||| || | || ||| Sbjct 3756 GATACGATCGAGAATGTAAAGGCTAAAATTCAAGACAAAGAGGGCATTCCTCCTGATCAG 3697 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 ||| |||| || | ||||||||| ||||| || |||| || || | || || || Sbjct 3696 CAAAGACTGATTTTCGCGGGCAAGCAGCTCGAGGACGGACGTACTTTGTCAGATTATAAT 3637 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || ||||| || | || || ||||| || | || | || ||||| Sbjct 3636 ATTCAGAAAGAATCTACACTACATCTTGTACTCCGTCTTAGAGGCGG 3590 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 514982173407040