Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_001987.1 Length=108409 Score E Sequences producing significant alignments: (Bits) Value seq942 122 6e-23 >seq942 Length=37279 Score = 122 bits (134), Expect = 6e-23 Identities = 162/224 (72%), Gaps = 1/224 (0%) Strand=Plus/Minus Query 97396 CCTTGATATTCTGCTCCAAAATGCCTCCATTGGAATCCATAAACAGGTCCAAGGTCTCCT 97455 ||||| ||||| || ||||| || ||||||||||||||||| ||||| || | || ||| Sbjct 15460 CCTTG-TATTCGGCACCAAAGTGTCTCCATTGGAATCCATAGACAGGCCCCAAATCACCT 15402 Query 97456 TCTTCTCTATCACAGAAACCAAGCTTATCTAAATAGGACCTAGATCCATTTGCATCCCAA 97515 || ||||| || ||||||| |||||| ||| | || |||||| |||||||| Sbjct 15401 TCCTCTCTGTCGGTGAAACCACAAGAATCTAAGAAGGCACGCGAACCATTTTCATCCCAA 15342 Query 97516 ATGTGCACACCAGATGCTGCAAGCTCTTTGCTGTCAGTAGATCCTCTGATAAACCACAAC 97575 || || | | | ||| | |||||| | || |||||| |||||||||| || Sbjct 15341 ATATGAATATCCTTGTCTGTCAATTCTTTGGAATTTGTTGATCCTTTGATAAACCATAAT 15282 Query 97576 AATTCTTCCACAACACCTCTCCAAAATACTCTCTTAGTTGTTAA 97619 |||||||| || | ||| ||| |||||| | || ||||| || Sbjct 15281 AATTCTTCAACTATTGCTCGCCAGAATACTGTTTTGGTTGTCAA 15238 Score = 102 bits (112), Expect = 6e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 97111 AAATCAGTGACATGGGCGATCATACAAGTTAATAGAGAATAGCTAGCAATGTTAAAAGGC 97170 ||| |||| ||||| ||||||||| |||| |||| ||||| || |||||||| ||| Sbjct 15874 AAACCAGTAACATGAGCGATCATATAAGTCAATAAGGAATATGACGCTATGTTAAATGGC 15815 Query 97171 ACCCCTAGTCCCATATCAGCTGATCTTTGATATAACTGACAGGAAAGCTTTCCATCACAC 97230 || |||| |||||||| || ||||||||| | ||| || | | || | | Sbjct 15814 ACTCCTAAACCCATATCTGCGCTTCTTTGATAAAGCTGCGCAGACAATTCACCGTTATTT 15755 Query 97231 ACATAAAACTGACTCAATACATGACAGGGGGGCAACGCCATTTTTGGAACATCTAAGACA 97290 |||||||| || || || ||||| || || || ||||||||||||| ||| | | Sbjct 15754 ACATAAAATTGTACCATAACGTGACACGGTGGTAATGCCATTTTTGGAATATCGACTGGA 15695 Query 97291 TTCCAAGCACACAT 97304 |||||||| |||| Sbjct 15694 TTCCAAGCGGACAT 15681 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 346628450470280