Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_001993.1 Length=236120 Score E Sequences producing significant alignments: (Bits) Value seq942 145 1e-29 seq12857 140 5e-28 seq1592 120 5e-22 seq2779 102 1e-16 >seq942 Length=37279 Score = 145 bits (160), Expect = 1e-29 Identities = 194/267 (73%), Gaps = 2/267 (1%) Strand=Plus/Minus Query 205693 TCAAATCCTTGATTTGTATAATTTGTATCCATATCAATATATTTAGCACCAAAATGACGC 205752 |||| ||||| ||||||||| || | |||||| | |||| |||||||| || | | Sbjct 15494 TCAATACCTTGGCCTGTATAATTCGTGTGCATATCCTTGTATTCGGCACCAAAGTGTCTC 15435 Query 205753 CATTGAAAACCATAAACTGGACCTAAATCACCTTCTTTTCTATCATTAAAACCACGtttt 205812 ||||| || ||||| || || || ||||||||||| | ||| || | ||||||| Sbjct 15434 CATTGGAATCCATAGACAGGCCCCAAATCACCTTCCTCTCTGTCGGTGAAACCACAAGAA 15375 Query 205813 tttatatattttaatgatccattttcatcccaaatatggattcctttattttttaGAATA 205872 | || | || |||||||||||||||||||| || | || | | | | | | Sbjct 15374 TCTAAGAAGGCACGCGAACCATTTTCATCCCAAATATGAATATCCTTGTCTGTCA-ATTC 15316 Query 205873 TTTGTA-TTAGTTGATCCAGATATAAACCATAATAATTCTTCAACAATTCCTCTCCAAAA 205931 |||| | || |||||||| ||||||||||||||||||||||| ||| ||| ||| || Sbjct 15315 TTTGGAATTTGTTGATCCTTTGATAAACCATAATAATTCTTCAACTATTGCTCGCCAGAA 15256 Query 205932 CATTGATTTTGTTGTAAATAATGGAAA 205958 | || ||| ||||| |||||||| || Sbjct 15255 TACTGTTTTGGTTGTCAATAATGGGAA 15229 Score = 91.5 bits (100), Expect = 2e-13 Identities = 147/209 (70%), Gaps = 7/209 (3%) Strand=Plus/Minus Query 205435 TTTAAATTAGTTAAATGTGCAATCATATAAGTCAATAA--ACTATAACTAGCAACATTAA 205492 || ||| ||| | ||| || ||||||||||||||||| | ||| || || | |||| Sbjct 15877 TTCAAACCAGTAACATGAGCGATCATATAAGTCAATAAGGAATATGAC--GCTATGTTAA 15820 Query 205493 ATGGTACACCTAAACCCATATCAGCTGATCTTTGATACATTTGACATGTAAGATATTTAT 205552 |||| || |||||||||||||| || ||||||||| | || | | ||| | Sbjct 15819 ATGGCACTCCTAAACCCATATCTGCGCTTCTTTGATAAAGCTG---CGCAGACAATTCAC 15763 Query 205553 TATTAATTACATGAAATTGTACAAAACAATGACAAGGTGGTATAACCATATTTTCAACAT 205612 ||| |||||| ||||||||| | | ||||| ||||||| |||| ||| || || Sbjct 15762 CGTTATTTACATAAAATTGTACCATAACGTGACACGGTGGTAATGCCATTTTTGGAATAT 15703 Query 205613 CTATAGGATTCCAGGCTGTTAATATTATA 205641 | | |||||||| || | | ||| ||| Sbjct 15702 CGACTGGATTCCAAGCGGACATTATAATA 15674 >seq12857 Length=4317 Score = 140 bits (154), Expect = 5e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 ||||| || || | ||||| || || || ||||| || || | || | || ||| | Sbjct 4272 ATGCAGATTTTCGTCAAGACTCTCACCGGTAAAACCATCACATTGGAAGTCGAGGCATCT 4213 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| |||||||| ||||| |||||||| || || ||||| Sbjct 4212 GATACGATAGAGAATGTCAAAGCCAAAATTCAGGATAAGGAAGGTATCCCTCCGGATCAG 4153 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | || ||||||||||||||| | || ||| |||| || | ||||| ||| Sbjct 4152 CAGAGATTGATCTTTGCAGGAAAACAACTCGAAGATGGTCGCACGCTTTCTGATTACAAT 4093 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||||| || ||||||||||| ||||| ||| | ||| |||| |||||||| Sbjct 4092 ATTCAGAAGGAATCAACTTTACATTTAGTTCTTCGTCTACGTGGTGGTAT 4043 Score = 113 bits (124), Expect = 7e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || | ||||| |||||||| ||| | ||| | || || Sbjct 3816 ATGCAAATTTTCGTCAAAACTTTGACAGGAAAAACTATCACTTTGGAGGTAGAGGCTTCG 3757 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| |||| ||||||||||| ||||| || || || |||||||| Sbjct 3756 GATACGATCGAGAATGTAAAGGCTAAAATTCAAGACAAAGAGGGCATTCCTCCTGATCAG 3697 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 ||||| || ||||| || || || || | ||||| | || || || |||||||||| Sbjct 3696 CAAAGACTGATTTTCGCGGGCAAGCAGCTCGAGGACGGACGTACTTTGTCAGATTATAAT 3637 Query 124719 ATTCAAAAAGAATCAAC 124735 ||||| |||||||| || Sbjct 3636 ATTCAGAAAGAATCTAC 3620 >seq1592 Length=29089 Score = 120 bits (132), Expect = 5e-22 Identities = 170/239 (71%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || || | || || || || || || | ||| ||||||| Sbjct 642 AATGCAGATCTTTGTCAAAACCTTGACGGGAAAGACCATCACATTGGAGGTTGAAGCTTC 583 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || ||| | ||| ||||||||| ||||||||||| || || || ||||| Sbjct 582 AGACACGATCGAGAATGTCAAAGCGAAAATTCAGGATAAAGAAGGCATCCCCCCAGATCA 523 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||||| | || ||||| |||||||| | || || | || || | || || || Sbjct 522 GCAAAGATTGATCTTTGCTGGAAAACAGCTTGAAGACGGCCGCACGCTTTCCGACTACAA 463 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTATTAAAAATT 124776 ||||| ||||| ||||||||||| |||||| | ||| |||| |||||||| ||| || Sbjct 462 CATTCAGAAAGAGTCAACTTTGCACTTGGTTCTTCGTCTACGTGGTGGTATGCAAATTT 404 Score = 114 bits (126), Expect = 2e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Minus Query 124536 ACAATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCA 124595 || ||||| || ||| | |||||| |||| || |||||||||||| | || ||||||| Sbjct 872 ACCATGCAGATTTTTGTGAAGACATTAACTGGAAAAACTATAACTCTCGAAGTTGAAGCC 813 Query 124596 AATGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGAT 124655 ||| || || || |||| ||| ||||| || ||||| ||||| |||||||| Sbjct 812 TCTGACACTATCGAGAACGTAAAGGCGAAGATTCAGGACAAAGAGGGTATTCCACCTGAC 753 Query 124656 CAACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTAT 124715 || || | | ||||| || || ||||| | || || | || || || ||||| Sbjct 752 CAGCAGCGCTTGATTTTCGCCGGGAAACAGCTTGAAGACGGACGTACCTTGTCCGATTAC 693 Query 124716 AATATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| || ||||| ||| | ||| ||||| | | ||||| || || || Sbjct 692 AATATTCAGAAGGAATCCACTCTCCATCTGGTTCTCAGATTACGTGGCGGAAT 640 Score = 109 bits (120), Expect = 8e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || | || || |||||||| ||| | || | || || Sbjct 413 ATGCAAATTTTCGTCAAAACCTTGACGGGAAAAACTATTACTTTGGAAGTAGAGGCTTCA 354 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 ||||| || ||| | ||| ||||||||||| |||||||| || || || ||||| Sbjct 353 GATACGATCGAGAATGTCAAAGCCAAAATTCAAGACAAAGAAGGCATCCCTCCGGATCAG 294 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || || | ||||| || || || || | ||||| | || || || ||||| ||| Sbjct 293 CAGAGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAAT 234 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 |||||||| ||||| ||| ||||||| ||||| || | || || ||||| Sbjct 233 ATTCAAAAGGAATCCACTCTGCATTTAGTTTTGCGACTTCGCGGAGGTAT 184 >seq2779 Length=20704 Score = 102 bits (112), Expect = 1e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| | || || || ||||||||||| || ||| | || | ||||| Sbjct 8376 AATGCAGATCTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTC 8317 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 || || || || ||||| ||||| || || |||||||| || || || ||||| Sbjct 8316 AGACACCATCGAGAACGTAAAAGCAAAAATCCAGGACAAAGAAGGAATTCCTCCCGATCA 8257 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 ||| | || |||||||| || || || | || ||| | |||| | |||||||| Sbjct 8256 GCAACGTCTCATTTTTGCCGGTAAGCAGCTGGAAGATGGCAGAACTCTTTCCGATTATAA 8197 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACG 124753 ||||||||| ||||| || | || || ||||| || Sbjct 8196 TATTCAAAAGGAATCTACACTTCACTTAGTTTTGCG 8161 Score = 93.3 bits (102), Expect = 6e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 124538 AATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAA 124597 |||||| || ||| ||||||| || ||||||||||| || || | || ||||||| Sbjct 8604 AATGCAGATCTTTGTAAAGACTCTCACAGGCAAAACCATCACCCTTGAAGTTGAAGCTTC 8545 Query 124598 TGATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCA 124657 ||||| || ||| | || ||||| || || ||||| || || || || ||||| Sbjct 8544 AGATACCATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCA 8485 Query 124658 ACAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAA 124717 || | || ||||| || || |||||| | || ||| | |||| | ||||| || Sbjct 8484 GCAGCGTCTGATTTTCGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGATTACAA 8425 Query 124718 TATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 ||| || || ||||| || | ||| |||| | ||| | || || || || Sbjct 8424 TATCCAGAAGGAATCCACGCTTCATCTGGTCCTGCGTCTTCGTGGAGGAAT 8374 Score = 91.5 bits (100), Expect = 2e-13 Identities = 158/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 124539 ATGCAAATATTTATAAAGACACTAACAGGCAAAACTATAACTATAGAGATTGAAGCAAAT 124598 |||||||| || | || || || || || ||||| || || | ||| | ||||| | Sbjct 8831 ATGCAAATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTTGAGGTAGAAGCTTCT 8772 Query 124599 GATACAATTTCTAATTTAAAACAGAAAATTCAAGATAAAGAAGGTATACCACCTGATCAA 124658 || || || ||| | ||| || |||||||| || ||||| || ||||||||||| Sbjct 8771 GACACTATAGAGAATGTTAAAGCCAAGATTCAAGACAAGGAAGGCATTCCACCTGATCAG 8712 Query 124659 CAAAGGCTTATTTTTGCAGGAAAACAATTAGAGGATAGTCGAACATTAGAAGATTATAAT 124718 || | || || ||||| |||||||| | || ||| | |||| | ||||| ||| Sbjct 8711 CAGCGCCTGATCTTTGCCGGAAAACAGCTGGAAGATGGCAGAACTCTTTCCGATTACAAT 8652 Query 124719 ATTCAAAAAGAATCAACTTTGCATTTGGTTTTACGTTTACGAGGTGGTAT 124768 || || || ||||| || | ||| |||| | ||| | || || || || Sbjct 8651 ATCCAGAAGGAATCCACACTTCATCTGGTCCTGCGTCTTCGTGGAGGAAT 8602 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 755108452467200