Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq2779 138 1e-27 seq121 113 4e-20 seq12857 111 1e-19 seq1592 102 7e-17 >seq2779 Length=20704 Score = 138 bits (152), Expect = 1e-27 Identities = 169/228 (74%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | || ||| || ||||| | |||||| || |||||||| || |||||| Sbjct 8149 CCTCCGCGAAGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAA 8208 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | ||| || ||||| || || || | |||||||| |||||||||||||| Sbjct 8209 AGAGTTCTGCCATCTTCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGGA 8268 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 || || || ||||| |||||| ||| || | |||| |||||| | ||| ||||| Sbjct 8269 ATTCCTTCTTTGTCCTGGATTTTTGCTTTTACGTTCTCGATGGTGTCTGAAGCT-TCGAC 8327 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || | || | |||||||| || |||||||| ||||| |||||||| Sbjct 8328 TTCAAGAGTAATGGTTTTGCCTGTAAGAGTTTTCACAAAGATCTGCAT 8375 Score = 109 bits (120), Expect = 5e-19 Identities = 163/229 (71%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 ||||| || | | || |||| || | ||| || || || || || ||||||||| Sbjct 8605 CCTCCACGAAGACGCAGGACCAGATGAAGTGTGGATTCCTTCTGGATATTGTAATCGGAA 8664 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| | ||| || ||||||||||| || |||| || ||||||||||| || || Sbjct 8665 AGAGTTCTGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAGGCGCTGCTGATCAGGTGGA 8724 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGAC 118690 ||||| ||||||||| ||| || |||||| | || | ||||| | ||| || || Sbjct 8725 ATGCCTTCCTTGTCTTGAATCTTGGCTTTAACATTCTCTATAGTGTCAGAAGCT-TCTAC 8783 Query 118691 CTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 118739 ||| | ||| | ||||| || || |||||||| || || || |||||| Sbjct 8784 CTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATTTGCATG 8832 Score = 98.7 bits (108), Expect = 9e-16 Identities = 142/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || || || ||||||||| | ||| | ||| || || ||||| ||| Sbjct 8407 GTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTTCTGCCATCTTCAAGTTGTTTGCCA 8466 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 ||| | || |||||||||||||| || || || ||||| ||||| ||||| || Sbjct 8467 GCGAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTGTCCTGGATTTTGGCCTTC 8526 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | ||| | ||| || | ||| || || || | ||| | |||||||| || ||||| Sbjct 8527 ACATTTTCTATGGTATCTGAAGCT-TCAACTTCAAGGGTGATGGTTTTGCCTGTGAGAGT 8585 Query 118721 TTTTACAAAAATCTGCAT 118738 |||||||| |||||||| Sbjct 8586 CTTTACAAAGATCTGCAT 8603 >seq121 Length=74473 Score = 113 bits (124), Expect = 4e-20 Identities = 140/192 (73%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 118549 CTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGA 118608 ||||||| ||||| ||||| | ||| || ||| || |||||||||||||| ||| Sbjct 8121 CTTTTTGGATGTTATAATCAGAGAGAGTACGTCCATCTTCCAGCTGTTTTCCAGCAAAGA 8180 Query 118609 TGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTT 118668 | || ||||||||||| || || || ||||| || || ||| || ||| || | || Sbjct 8181 TAAGTCGCTGCTGATCTGGTGGAATTCCCTCTTTATCCTGAATCTTGGCTTTCACATTTT 8240 Query 118669 CGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAA 118728 ||| ||| || | | || ||||||| || | ||||| || || || ||||| || | Sbjct 8241 CGATGGTATCAGAGGCTTCTACCTCGAGAGTAATGGTTTTACCAGTGAGGGTTTTGACGA 8300 Query 118729 AAATCTGCATGG 118740 |||||||||||| Sbjct 8301 AAATCTGCATGG 8312 >seq12857 Length=4317 Score = 111 bits (122), Expect = 1e-19 Identities = 150/208 (72%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 118532 CAAG-TGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGA 118590 |||| || | |||||| ||||| ||||| || ||||| || ||| || ||||||| Sbjct 3609 CAAGATGTAGTGTAGATTCTTTCTGAATATTATAATCTGACAAAGTACGTCCGTCCTCGA 3668 Query 118591 GCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAA 118650 |||| || || ||| | || || | |||||||| ||||| |||||||| |||||| || Sbjct 3669 GCTGCTTGCCCGCGAAAATCAGTCTTTGCTGATCAGGAGGAATGCCCTCTTTGTCTTGAA 3728 Query 118651 TTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTGC 118710 |||| || || | |||| || |||| ||| ||||| | || | ||||| | Sbjct 3729 TTTTAGCCTTTACATTCTCGATCGTATCCGAAGCCTCTACCTCCAAAGTGATAGTTTTTC 3788 Query 118711 CGGTCAGAGTTTTTACAAAAATCTGCAT 118738 | |||| |||||| || ||||| ||||| Sbjct 3789 CTGTCAAAGTTTTGACGAAAATTTGCAT 3816 Score = 96.9 bits (106), Expect = 3e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | |||| || || || | ||||| || || ||||| |||||||| Sbjct 3816 TACCACCACGAAGCCTCAGAACTAAATGCAGAGTAGATTCCTTCTGAATATTGTAATCAG 3875 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | ||||| ||| || || ||||||||||| | || | | ||| ||||| |||| Sbjct 3876 AAAGCGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGTTGATCCGGAG 3935 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCG 118688 | ||||| || ||||| |||||| ||| || | ||| | || || | ||| |||| Sbjct 3936 GGATGCCTTCTTTGTCCTGAATTTTGGCTTTGACATTTTCAATTGTATCGGATGC-CTCG 3994 Query 118689 ACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || | || | || || ||||| ||||| || || ||||||||||| Sbjct 3995 ACTTCCAATGTGATGGTCTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4044 Score = 93.3 bits (102), Expect = 4e-14 Identities = 141/198 (71%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 118542 GTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCA 118601 || || || || ||||| |||||||| | ||||| ||| ||||| |||||||| Sbjct 4076 GTTGATTCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCTTCGAGTTGTTTTCCT 4135 Query 118602 GCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTA 118661 || |||| | | ||||||||| ||||| || || ||||| || |||||| ||| Sbjct 4136 GCAAAGATCAATCTCTGCTGATCCGGAGGGATACCTTCCTTATCCTGAATTTTGGCTTTG 4195 Query 118662 ACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGT 118720 || | || | || || | ||| |||||| || | || | ||||| ||||| ||||| Sbjct 4196 ACATTCTCTATCGTATCAGATGC-CTCGACTTCCAATGTGATGGTTTTACCGGTGAGAGT 4254 Query 118721 TTTTACAAAAATCTGCAT 118738 || || ||||||||||| Sbjct 4255 CTTGACGAAAATCTGCAT 4272 >seq1592 Length=29089 Score = 102 bits (112), Expect = 7e-17 Identities = 150/210 (71%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| | || |||||||| ||||||||||| ||| | ||||| || || Sbjct 433 ACCAAGTGCAAAGTTGACTCTTTCTGAATGTTGTAGTCGGAAAGCGTGCGGCCGTCTTCA 492 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 |||||||||||||| |||| | | |||||||| || || ||||| || || || | Sbjct 493 AGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGGGGGATGCCTTCTTTATCCTGA 552 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTT 118708 ||||| ||| || | |||| ||||| | ||| || ||||| | || | || || Sbjct 553 ATTTTCGCTTTGACATTCTCGATCGTGTCTGAAGCT-TCAACCTCCAATGTGATGGTCTT 611 Query 118709 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || |||| ||||| ||||| |||||||| Sbjct 612 TCCCGTCAAGGTTTTGACAAAGATCTGCAT 641 Score = 98.7 bits (108), Expect = 9e-16 Identities = 135/186 (73%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 118554 TGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGA 118613 ||||| ||||||||| || ||||| ||||| ||||| || || ||| | || | Sbjct 1 TGAATATTGTAATCGGACAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAAT 60 Query 118614 CGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACG 118673 | ||||||||| ||||| ||||| || |||||| |||||| ||| || | || | Sbjct 61 CTCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGAATTTTGGCTTTGACATTCTCAATC 120 Query 118674 GTGTCCG-TGCTCTCGACCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAAT 118732 || || | ||| |||||| || | || | ||||| ||||| ||||| || || ||||| Sbjct 121 GTATCAGATGC-CTCGACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAAT 179 Query 118733 CTGCAT 118738 |||||| Sbjct 180 CTGCAT 185 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 || || |||||||| | |||| |||| || || || || ||||| ||||||||| | Sbjct 643 CCGCCACGTAATCTGAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCGGAC 702 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | || || || || |||||||| || ||| | || | |||||||| || || || Sbjct 703 AAGGTACGTCCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCAGGTGGA 762 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||| ||||| ||| || || || | |||| ||||| | | || || Sbjct 763 ATACCCTCTTTGTCCTGAATCTTCGCCTTTACGTTCTCGATAGTGTCAGAGGCTTCAACT 822 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATGG 118740 |||| || | ||||| || || | || || |||||||||||||||| Sbjct 823 TCGAGAGTTATAGTTTTTCCAGTTAATGTCTTCACAAAAATCTGCATGG 871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433635805916368