Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq953 114 1e-20 seq479 113 5e-20 seq415 111 2e-19 seq718 107 2e-18 seq38 107 2e-18 seq2779 105 8e-18 seq9789 104 3e-17 seq4956 95.1 1e-14 seq3018 95.1 1e-14 seq1592 95.1 1e-14 >seq953 Length=37090 Score = 114 bits (126), Expect = 1e-20 Identities = 74/81 (91%), Gaps = 0/81 (0%) Strand=Plus/Plus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| ||||||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 36947 AAAAAATTTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 37006 Query 60117 TCACCACTATACTACCGAGGA 60137 | ||||||||||||||||||| Sbjct 37007 TGACCACTATACTACCGAGGA 37027 >seq479 Length=49247 Score = 113 bits (124), Expect = 5e-20 Identities = 74/82 (90%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 |||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 26297 AAAAATATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 26238 Query 60117 TCACCACTATACTACCGAGGAT 60138 | |||||||||||||||||||| Sbjct 26237 TGACCACTATACTACCGAGGAT 26216 >seq415 Length=51679 Score = 111 bits (122), Expect = 2e-19 Identities = 75/83 (90%), Gaps = 2/83 (2%) Strand=Plus/Plus Query 60057 AAAAATT--TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACAT 60114 ||||||| |||||| |||| ||||||||||||| ||||||||||||||||||||| || Sbjct 51594 AAAAATTAATTCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGAT 51653 Query 60115 ACTCACCACTATACTACCGAGGA 60137 ||| ||||||||||||||||||| Sbjct 51654 ACTGACCACTATACTACCGAGGA 51676 >seq718 Length=41901 Score = 107 bits (118), Expect = 2e-18 Identities = 76/86 (88%), Gaps = 1/86 (1%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 ||||| | |||| |||| ||||||||||||| ||||||||||||||||||||| |||| Sbjct 18580 AAAAAAATCCTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 18521 Query 60117 TCACCACTATACTACCGAGGA-TTGA 60141 | ||||||||||||||||||| |||| Sbjct 18520 TGACCACTATACTACCGAGGACTTGA 18495 >seq38 Length=95349 Score = 107 bits (118), Expect = 2e-18 Identities = 68/74 (92%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| |||| ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1235 CTCCCCGGCGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 1294 Query 60126 TACTACCGAGGATT 60139 |||||||||||||| Sbjct 1295 TACTACCGAGGATT 1308 >seq2779 Length=20704 Score = 105 bits (116), Expect = 8e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| || || || | ||| |||||||||||||| ||||| | ||||| | | Sbjct 8161 CGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAAAGAGTTCTGCCA 8220 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || ||||||||||| || || ||||| || ||||| |||| || | | || ||| Sbjct 8221 TCTTCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGGAATTCCTTCTTTG 8280 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||||||| ||| | || | | ||||| | ||| || || | || ||| Sbjct 8281 TCCTGGATTTTTGCTTTTACGTTCTCGATGGTGTCTGAAGCTTCGACTTCAAGAGTAATG 8340 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATT 43184 |||||||| || || || || |||||||| |||||| Sbjct 8341 GTTTTGCCTGTAAGAGTTTTCACAAAGATCTGCATT 8376 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 42956 TCCTCCTCTTAAACGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGC 43015 |||||| | | ||||| |||| ||| | |||| ||||| || ||||||||||| | Sbjct 8604 TCCTCCACGAAGACGCAGGACCAGATGAAGTGTGGATTCCTTCTGGATATTGTAATCGGA 8663 Query 43016 CAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGG 43075 ||||| | | || || ||||| || || || || || || |||||||| || | || Sbjct 8664 AAGAGTTCTGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAGGCGCTGCTGATCAGGTGG 8723 Query 43076 CACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCA 43134 | || ||||||| | ||| | || | ||| | || | | ||||| | ||| | Sbjct 8724 AATGCCTTCCTTGT-CTTGAATCTTGGCTTTAACATTCTCTATAGTGTCAGAAGCTTCTA 8782 Query 43135 CATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 | || | ||||||||||| || || || || || || ||||||||||| Sbjct 8783 CCTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATTTGCAT 8831 >seq9789 Length=6185 Score = 104 bits (114), Expect = 3e-17 Identities = 68/75 (91%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 |||||||| | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 5690 TCTCCTCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACT 5749 Query 60125 ATACTACCGAGGATT 60139 |||||| |||||||| Sbjct 5750 ATACTATCGAGGATT 5764 >seq4956 Length=13046 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 9734 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 9675 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 9674 TACTATCGAGGA 9663 >seq3018 Length=19698 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 17833 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTAACCACTA 17774 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 17773 TACTATCGAGGA 17762 >seq1592 Length=29089 Score = 95.1 bits (104), Expect = 1e-14 Identities = 152/216 (70%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 ||||| || ||||||| ||| |||||||||||||||||||| | || || || || Sbjct 199 CGCAAAACTAAATGCAGAGTGGATTCCTTTTGAATATTGTAATCGGACAAGGTGCGTCCG 258 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || | || |||||| || | || | || || ||| Sbjct 259 TCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGGGATGCCTTCTTTG 318 Query 43089 TCCATGATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGAT 43147 | | ||| |||| | ||||| || | | ||| || | || || || | || || Sbjct 319 T-CTTGAATTTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCTACTTCCAAAGTAAT 377 Query 43148 GGTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 ||||| ||||| | || || || || |||||||| Sbjct 378 AGTTTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 413 Score = 84.2 bits (92), Expect = 2e-11 Identities = 146/210 (70%), Gaps = 2/210 (1%) Strand=Plus/Plus Query 42975 ACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCT 43034 |||| ||| | ||| ||||| |||||||||||||| | || || || |||| || Sbjct 661 ACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCGGACAAGGTACGTCCGTCTTCA 720 Query 43035 AGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATG 43094 ||||| || || ||||| || | ||||||||||| | || | | ||| |||||| || Sbjct 721 AGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCAGGTGGAATACCCTCTTTGTCC-TG 779 Query 43095 ATTTTTTG-TTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTT 43153 | | || | || | || | | ||||| | ||| || |||| || || ||||| Sbjct 780 AATCTTCGCCTTTACGTTCTCGATAGTGTCAGAGGCTTCAACTTCGAGAGTTATAGTTTT 839 Query 43154 GCCCGTTAGCGTCTTTACAAAGATTTGCAT 43183 || |||| ||||| ||||| || ||||| Sbjct 840 TCCAGTTAATGTCTTCACAAAAATCTGCAT 869 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571554535313120