Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_002520.1 Length=232392 Score E Sequences producing significant alignments: (Bits) Value seq12857 113 7e-20 seq2779 107 3e-18 seq1483 98.7 1e-15 seq36578 95.1 2e-14 seq1592 93.3 6e-14 >seq12857 Length=4317 Score = 113 bits (124), Expect = 7e-20 Identities = 107/137 (78%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAA 146110 ||||| | ||| || | || ||||| | ||||||||| || ||||| ||||| ||| Sbjct 3818 CCACCACGAAGCCTCAGAACTAAATGCAGAGTAGATTCCTTCTGAATATTGTAATCAGAA 3877 Query 146111 AGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGA 146170 || || | | ||| || | |||||||||||||||||||||||| || ||||||||||| Sbjct 3878 AGCGTGCGACCATCTTCAAGTTGTTTTCCAGCAAAAATCAATCTCTGTTGATCCGGAGGG 3937 Query 146171 ATTCCTTCTTTATCTTG 146187 || |||||||| || || Sbjct 3938 ATGCCTTCTTTGTCCTG 3954 Score = 107 bits (118), Expect = 3e-18 Identities = 95/119 (80%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 || ||||||||||| ||||| || ||||| ||||| ||||| || | | ||| || Sbjct 4064 ACTAAATGTAAAGTTGATTCCTTCTGAATATTGTAATCAGAAAGCGTGCGACCATCTTCG 4123 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | ||||||||| ||||| |||||||| |||||||||||||| || ||||| ||||| || Sbjct 4124 AGTTGTTTTCCTGCAAAGATCAATCTCTGCTGATCCGGAGGGATACCTTCCTTATCCTG 4182 Score = 105 bits (116), Expect = 1e-17 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 146049 TTCCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTG 146108 |||| |||||||| | | ||| | ||||| ||||||||||| ||||||||||||| Sbjct 3588 TTCCGCCTCTAAGACGGAGTACAAGATGTAGTGTAGATTCTTTCTGAATATTATAATCTG 3647 Query 146109 AAAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAG 146168 | | ||| | | || || | || || || || ||||||| |||||||||||| |||| Sbjct 3648 ACAAAGTACGTCCGTCCTCGAGCTGCTTGCCCGCGAAAATCAGTCTTTGCTGATCAGGAG 3707 Query 146169 GAATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTA 146228 |||| || ||||| ||||| ||||| ||| |||| Sbjct 3708 GAATGCCCTCTTTGTCTTGAATTTTAGCCTTTACATTCTCGATCGTATCCGAAGCCTCTA 3767 Query 146229 CTTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 | || | ||||| ||||| ||||| || ||||| | ||| |||||||| Sbjct 3768 CCTCCAAAGTGATAGTTTTTCCTGTCAAAGTTTTGACGAAAATTTGCAT 3816 >seq2779 Length=20704 Score = 107 bits (118), Expect = 3e-18 Identities = 108/138 (78%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || || | ||||| || || || || | |||||||| ||| || ||||||||||| || Sbjct 8149 CCTCCGCGAAGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGA-ATATTATAATCGGA 8207 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 ||||||||||| ||| || | || || || |||||||| | | ||||||||| ||||| Sbjct 8208 AAGAGTTCTGCCATCTTCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGG 8267 Query 146170 AATTCCTTCTTTATCTTG 146187 |||||||||||| || || Sbjct 8268 AATTCCTTCTTTGTCCTG 8285 Score = 98.7 bits (108), Expect = 1e-15 Identities = 143/210 (68%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||| ||| | || ||||| || ||||| ||||| ||||||||||||| ||| || Sbjct 8395 ACCAGATGAAGCGTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTTCTGCCATCTTCA 8454 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | |||||| ||||| ||||||| | ||||||||||| |||||||| ||||| || || Sbjct 8455 AGTTGTTTGCCAGCGAAAATCAGACGCTGCTGATCCGGGGGAATTCCCTCTTTGTCCTGG 8514 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 ||||||||| ||| ||||| || ||||| ||||| Sbjct 8515 ATTTTGGCCTTCACATTTTCTATGGTATCTGAAGCTTCAACTTCAAGGGTGATGGTTTTG 8574 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCATT 146278 ||||| | || || | || || |||||| Sbjct 8575 CCTGTGAGAGTCTTTACAAAGATCTGCATT 8604 Score = 93.3 bits (102), Expect = 6e-14 Identities = 141/209 (67%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 |||| ||| | || ||||| || ||||| ||||| ||||||||||||| ||| || Sbjct 8623 ACCAGATGAAGTGTGGATTCCTTCTGGATATTGTAATCGGAAAGAGTTCTGCCATCTTCC 8682 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTGN 146188 | |||||||| ||||| |||| | |||||||| || ||||| ||||| || ||||| Sbjct 8683 AGCTGTTTTCCGGCAAAGATCAGGCGCTGCTGATCAGGTGGAATGCCTTCCTTGTCTTGA 8742 Query 146189 NNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTACTTCTAGTGTGATTGTTTTA 146248 ||| || ||| |||||| || || ||||| ||||| Sbjct 8743 ATCTTGGCTTTAACATTCTCTATAGTGTCAGAAGCTTCTACCTCAAGGGTGATGGTTTTC 8802 Query 146249 CCTGTTAATGTTTTAATGAATATTTGCAT 146277 || || | ||||| | ||| |||||||| Sbjct 8803 CCAGTGAGAGTTTTCACGAAGATTTGCAT 8831 >seq1483 Length=30179 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 146068 TACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATC 146127 |||||| || || ||||||||||| ||||| || || || | ||| || | ||| || Sbjct 23266 TACCAAGTGCAAGGTAGATTCTTTCTGAATATTGTAGTCGGATAAAGTCCTACCATCTTC 23325 Query 146128 TAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCT 146176 ||||| || |||||||| ||||||||||||||||| || ||||||||| Sbjct 23326 CAATTGCTTGCCAGCAAAGATCAATCTTTGCTGATCTGGCGGAATTCCT 23374 >seq36578 Length=509 Score = 95.1 bits (104), Expect = 2e-14 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Minus Query 96470 TGTTATGAACACATCAAAGACTCATATTATTATGGTTTATTTGGTGATTTTAAATTAGTT 96529 |||| ||||||||||||||||| | ||||||||| |||||||| |||||| | | Sbjct 453 TGTTTCGAACACATCAAAGACTCGTTTTATTATGGCATATTTGGTCCGTTTAAACTTATC 394 Query 96530 ATAGATAAAACCACAGGTTGTTTTAATGCTACTAAATTATGTAATTTATCAGGAAAAAGA 96589 | ||||||| |||||| | ||| || || |||||||||| | | | ||| || | Sbjct 393 GTCGATAAAAACACAGGATTTTTCAACGCGTCTAAATTATGCACTGAAGGAGGGAAGAAT 334 Query 96590 TTTAGAAATTGGATTAGATTAGATAGATCTAAACAATTAT-TAAAATAT 96637 ||||| ||||| | |||| | || |||||| | |||| || ||||| Sbjct 333 TTTAGTGATTGGTATCGATTGAAAAGTTCTAAA-AGTTATATAGAATAT 286 >seq1592 Length=29089 Score = 93.3 bits (102), Expect = 6e-14 Identities = 92/119 (77%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 146069 ACCAAATGTAAAGTAGATTCTTTAGATATATTATAATCTGAAAGAGTTCTGCTATCATCT 146128 ||||| || ||||| || ||||| || || || || ||||| || | || || || Sbjct 433 ACCAAGTGCAAAGTTGACTCTTTCTGAATGTTGTAGTCGGAAAGCGTGCGGCCGTCTTCA 492 Query 146129 AATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGGAATTCCTTCTTTATCTTG 146187 | |||||||||||||| ||||||||||||||||| || || || ||||||||||| || Sbjct 493 AGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGGGGGATGCCTTCTTTATCCTG 551 Score = 87.8 bits (96), Expect = 3e-12 Identities = 153/228 (67%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 146051 CCACCTCTAAGTCTTAATACCAAATGTAAAGTAGATTC-TTTAGATATATTATAATCTGA 146109 || || | ||||| || || ||||| | ||| ||||| ||| || ||||| ||||| || Sbjct 187 CCTCCGCGAAGTCGCAAAACTAAATGCAGAGTGGATTCCTTTTGA-ATATTGTAATCGGA 245 Query 146110 AAGAGTTCTGCTATCATCTAATTGTTTTCCAGCAAAAATCAATCTTTGCTGATCCGGAGG 146169 | || | | || || | || || || || ||||||||||| |||||||||||||| Sbjct 246 CAAGGTGCGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAATCTCTGCTGATCCGGAGG 305 Query 146170 AATTCCTTCTTTATCTTGNNNNNNNNNNNNNNNNNNNNNNNNAGTATCTGAACTTTCTAC 146229 || |||||||| ||||| ||||||||| ||||| Sbjct 306 GATGCCTTCTTTGTCTTGAATTTTGGCTTTGACATTCTCGATCGTATCTGAAGCCTCTAC 365 Query 146230 TTCTAGTGTGATTGTTTTACCTGTTAATGTTTTAATGAATATTTGCAT 146277 ||| | || || ||||| || || || ||||| | ||| |||||||| Sbjct 366 TTCCAAAGTAATAGTTTTTCCCGTCAAGGTTTTGACGAAAATTTGCAT 413 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 743184340679680