Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq2779 104 2e-17 seq1592 93.3 3e-14 >seq2779 Length=20704 Score = 104 bits (114), Expect = 2e-17 Identities = 162/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||| ||||| || | || ||| ||||| || ||||| ||||| Sbjct 8376 TCCTCCACGAAGACGCAGGACCAGATGAAGCGTGGATTCCTTCTGGATATTGTAATCGGA 8435 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | | | || || | || ||||| |||||||| || |||||||| || ||| Sbjct 8436 AAGAGTTCTGCCATCTTCAAGTTGTTTGCCAGCGAAAATCAGACGCTGCTGATCCGGGGG 8495 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTG--CTTTAGATCGGCTATCGAATCGGTCGATTCG 34339 | | ||| ||||| || ||||| ||| | || |||| | ||| | | ||| Sbjct 8496 AATTCCCTCTTTGTC--CTGGATTTTGGCCTTCACATTTTCTATGGTATCTGAAGCTTCA 8553 Query 34340 ACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || | |||||||||||||| |||||||| || |||||||||||||| Sbjct 8554 ACTTCAAGGGTGATGGTTTTGCCTGTGAGAGTCTTTACAAAGATCTGCAT 8603 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | ||| ||||| || | || ||| ||||| || ||||| ||||| Sbjct 8604 TCCTCCACGAAGACGCAGGACCAGATGAAGTGTGGATTCCTTCTGGATATTGTAATCGGA 8663 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || | | | || |||| ||| || || || || || || |||||||| || || Sbjct 8664 AAGAGTTCTGCCATCTTCCAGCTGTTTTCCGGCAAAGATCAGGCGCTGCTGATCAGGTGG 8723 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAG-ATCGGCTATCGAATCGGTCGATTCGA 34340 | || |||||||| ||||| |||||| || |||| | || | | ||| | Sbjct 8724 AATGCCTTCCTTGTCTTGAATCTTG-GCTTTAACATTCTCTATAGTGTCAGAAGCTTCTA 8782 Query 34341 CGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 | || | ||||||||||| || |||||||||||||| ||||| ||||| Sbjct 8783 CCTCAAGGGTGATGGTTTTCCCAGTGAGAGTTTTCACGAAGATTTGCAT 8831 Score = 89.7 bits (98), Expect = 3e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222 || ||||| || | || || | ||| | ||| ||| || || || || || ||||| Sbjct 8149 CCTCCGCGAAGTCGCAAAACTAAGTGAAGTGTAGATTCCTTTTGAATATTATAATCGGAA 8208 Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282 || | | | || |||| |||||| || || |||||||| || ||||| ||| || Sbjct 8209 AGAGTTCTGCCATCTTCCAGCTGCTTACCGGCAAAAATGAGACGTTGCTGATCGGGAGGA 8268 Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | || ||||| || ||||||||| | | | || | || | | |||||| Sbjct 8269 ATTCCTTCTTTGTCCTGGAT-TTTTGCTTTTACGTTCTCGATGGTGTCTGAAGCTTCGAC 8327 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || | || ||||||||||| || ||||||||||||||||||||||| Sbjct 8328 TTCAAGAGTAATGGTTTTGCCTGTAAGAGTTTTCACAAAGATCTGCAT 8375 >seq1592 Length=29089 Score = 93.3 bits (102), Expect = 3e-14 Identities = 136/187 (73%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 34205 TGTATGTTGTAGTCGGACA-GCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAG 34263 || || ||||| ||||||| | || || |||| |||| ||||||||| |||||||| | Sbjct 1 TGAATATTGTAATCGGACAAGGTG-CGTCCGTCCTCCAGCTGCTTGCCCGCGAAAATCAA 59 Query 34264 CCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTT-AGATCGGCTA 34322 | |||||| || || | || || ||||| || ||| ||||| | || | | Sbjct 60 TCTCTGCTGATCCGGAGGAATGCCTTCTTTGTCTTGAAT-TTTGGCTTTGACATTCTCAA 118 Query 34323 TCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGA 34382 ||| ||| | | ||||| |||| ||||||||||| ||||||||||| || || || | Sbjct 119 TCGTATCAGATGCCTCGACTTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAA 178 Query 34383 TCTGCAT 34389 ||||||| Sbjct 179 TCTGCAT 185 Score = 84.2 bits (92), Expect = 1e-11 Identities = 148/213 (69%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| ||||| |||||||| |||||||||||||| ||| ||| |||| Sbjct 430 AGAACCAAGTGCAAAGTTGACTCTTTCTGAATGTTGTAGTCGGAAAGCGTGCGGCCGTCT 489 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | ||| || || || || || | | ||||| || ||| | || || || || Sbjct 490 TCAAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGGGGGATGCCTTCTTTATCC 549 Query 34298 GCTATCTTTTGCTTT-AGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 || ||| ||||| | || | |||| || | | ||| || |||| |||||||| Sbjct 550 TGAAT-TTTCGCTTTGACATTCTCGATCGTGTCTGAAGCTTCAACCTCCAATGTGATGGT 608 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || || || | ||||| |||||||||||||| Sbjct 609 CTTTCCCGTCAAGGTTTTGACAAAGATCTGCAT 641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 322927086458240