Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_002642.1 Length=144575 Score E Sequences producing significant alignments: (Bits) Value seq532 82.4 7e-11 >seq532 Length=46805 Score = 82.4 bits (90), Expect = 7e-11 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 16487 TTTTCTTTGCTATCTAAAATATAAGTATCTATTAGTAAACTATACATTTCTGAATGAATA 16546 |||||||| ||| |||||||||| || || ||||| |||||| || ||||||||| Sbjct 27944 TTTTCTTTTTGATCGGAAATATAAGTTTCGATGAGTAAGGAATACATCTCAGAATGAATA 27885 Query 16547 TTCTCCATTGCTATCTGAAAACCATAAAAGCATCTAGCTTCGGATATTTGTACTTC-AGA 16605 || || || || ||||| || || || || || | ||||| | |||| || || || Sbjct 27884 TTTTCTATGGCGATCTGGAAGCCGTAGAAACAACGTGCTTCCGCGATTTTCACCTCTTGA 27825 Query 16606 GTAAAACCTTTCTGCTAAGTTTTCGTTAACTATTCCATCGCTAGCTGCAAAAAACGC 16662 | || || || | || || ||||| ||||||||| ||| ||||| ||||| Sbjct 27824 CT-GAATCTCTCAATCAGATTCTCATTAACGATTCCATCGGAAGCAGCAAAGAACGC 27769 Score = 82.4 bits (90), Expect = 7e-11 Identities = 141/200 (71%), Gaps = 6/200 (3%) Strand=Plus/Minus Query 16061 AATAATCTATCCGCCACAAATTCTATATACTGTTTCATTAAATCACAGTTCATTCCTATT 16120 || ||||| ||||| || ||||| || || | ||| | ||| ||||||||||| Sbjct 28732 AACAATCTGTCCGCGACGAATTCGATGTAGTTGCACATGAGCGTACAATTCATTCCTATC 28673 Query 16121 AATTTAACAGGGATTGCTTCTGTTAAAAAAtttttttCTATATTAACCGCTTCAATGATT 16180 |||| || || | ||||| |||||| || | ||||| || | || || || || || Sbjct 28672 AATTGGACTGGTAATGCTTGTGTTAAGAATTCCTTTTCAATTTCTACAGCATCCATTATA 28613 Query 16181 ATATCTCTTACTACACTATTTAACGGAGGGTTT--AATAA-GTGTTTAAACATTATACAA 16237 || | ||| ||| | | || | || ||| |||| |||||||||||||| ||| Sbjct 28612 AT-TGACTT--TACGCGTTCAAATGATGGCTTTTGTATAATGTGTTTAAACATTAAACAC 28556 Query 16238 GCAAAATCACAATGCAATCC 16257 |||||||| ||||| ||||| Sbjct 28555 GCAAAATCGCAATGTAATCC 28536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462299221354400