Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_002816.1 Length=123500 Score E Sequences producing significant alignments: (Bits) Value seq616 95.1 1e-14 seq1592 89.7 4e-13 >seq616 Length=44600 Score = 95.1 bits (104), Expect = 1e-14 Identities = 121/167 (72%), Gaps = 0/167 (0%) Strand=Plus/Minus Query 13252 TGGCGGATGCCGGTTTCTTCTACACTGGCTACGGTGACAATACAAAGTGCTTCTATTGTG 13311 |||| | || |||||||| ||||| || ||||||| | ||| ||||| |||| | Sbjct 25966 TGGCAGCGGCTGGTTTCTTTTACACGGGAAACGGTGATCAGACATTGTGCTATCATTGCG 25907 Query 13312 ACGGCGGATTGAAAGATTGGGAGCCGGAAGATGTACCTTGGGAACAGCATGTAAGATGGT 13371 || ||||||| |||||||||||| || |||| |||||||||||||| | | |||| Sbjct 25906 GAGGAGGATTGAGAGATTGGGAGCCTGAGGATGATCCTTGGGAACAGCACGCCAAGTGGT 25847 Query 13372 TCGACCGTTGCGCCTACGTTCAGCTAGTCAAGGGTAGAGACTACGTA 13418 ||||| || | ||| | | | |||||||| || || || ||| Sbjct 25846 TCGACTACTGTTCATACTTGCTTATGGTCAAGGGGAGGGATTATGTA 25800 >seq1592 Length=29089 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187 |||||||||| || ||| |||||||||||||||||| || ||| |||| || Sbjct 433 ACCAAGTGCAAAGTTGACTCTTTCTGAATGTTGTAGTCGGAAAGCGTGCGGCCGTCTTCA 492 Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247 || |||||||| || || ||||| | || || || || || | || || || ||| | Sbjct 493 AGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGGGGGATGCCTTCTTTATCCTGA 552 Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307 ||||| || || | | | |||| | | || ||||||| || || ||||| Sbjct 553 ATTTTCGCTTTGACATTCTCGATCGTGTCTGAAGCTTCAACCTCCAATGTGATGGTCTTT 612 Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336 ||||||| || || |||||||| ||||| Sbjct 613 CCCGTCAAGGTTTTGACAAAGATCTGCAT 641 Score = 87.8 bits (96), Expect = 1e-12 Identities = 153/223 (69%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 45119 AATCTTAATACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGA 45178 ||||| | |||| || || ||| ||||||||||| ||||| ||| || || Sbjct 652 AATCTGAGAACCAGATGGAGAGTGGATTCCTTCTGAATATTGTAATCGGACAAGGTACGT 711 Query 45179 TCGTCGTCCAGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCC 45238 |||| || || ||||| |||||||| ||||| ||||| ||||| || || | |||||| Sbjct 712 CCGTCTTCAAGCTGTTTCCCGGCGAAAATCAAGCGCTGCTGGTCAGGTGGAATACCCTCT 771 Query 45239 TTGTCCGCAATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTA 45298 |||||| ||| || ||| || | | | |||| | || || || | || Sbjct 772 TTGTCCTGAATCTTCGCCTTTACGTTCTCGATAGTGTCAGAGGCTTCAACTTCGAGAGTT 831 Query 45299 ATCGTCTTGCCCGTCAGAGTCTTCACAAAGATTTGCATGTTGC 45341 || || || || || | ||||||||||| || |||||| ||| Sbjct 832 ATAGTTTTTCCAGTTAATGTCTTCACAAAAATCTGCATGGTGC 874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 394897989512884