Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_003038.1 Length=212482 Score E Sequences producing significant alignments: (Bits) Value seq942 86.0 9e-12 >seq942 Length=37279 Score = 86.0 bits (94), Expect = 9e-12 Identities = 147/215 (68%), Gaps = 15/215 (7%) Strand=Plus/Plus Query 104530 GATAGAAGAATGATATTATTAGCTTGGAACCCAAAGGATAATTCTAAAATGGCACTTCCT 104589 ||||| | || ||| | | |||||||| ||| |||| | | ||||||||| | || Sbjct 15666 GATAGGCGTATTATAATGTCCGCTTGGAATCCAGTCGATATTCCAAAAATGGCATTACCA 15725 Query 104590 CCTTGTCATTGTATAGCACATTTTGATGTAAGTTCAAAAATAAATGGTAAAAGAGAATTG 104649 || ||||| ||| | ||| ||| |||||| | || ||| |||||| Sbjct 15726 CCGTGTCACGTTATGGTACAATTTTATGTAAAT---------AACGGT------GAATTG 15770 Query 104650 TCTTGTCATTTATTTCAAAGATCTGCAGATATGGGGTTGGGAGTTCCTTTTAACATAGCA 104709 ||| || | | ||||||| ||||||||||| || ||||| || ||||||||||| Sbjct 15771 TCTGCGCAGCTTTATCAAAGAAGCGCAGATATGGGTTTAGGAGTGCCATTTAACATAGCG 15830 Query 104710 AGTTATGCATTATTAACACATATAATAGCTCATGT 104744 ||| | ||||| || |||| || |||||||| Sbjct 15831 TCATATTCCTTATTGACTTATATGATCGCTCATGT 15865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 679501651385280