Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq1592 91.5 1e-13 seq1483 87.8 1e-12 seq12857 84.2 2e-11 >seq1592 Length=29089 Score = 91.5 bits (100), Expect = 1e-13 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | ||| |||| ||| | ||||| ||||| |||||||||||||||| Sbjct 415 CCACCACGTAGACGAAGAACCAAGTGCAAAGTTGACTCTTTCTGAATGTTGTAGTCGGAA 474 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || | ||||| | ||||| || ||| |||| | |||||| ||||| ||| Sbjct 475 AGCGTGCGGCCGTCTTCAAGCTGTTTTCCAGCAAAGATCAATCTTTGCTGATCTGGGGGG 534 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | |||||| ||||| ||||| | || ||||| | | | ||||| | || Sbjct 535 ATGCCTTCTTTATCCTGAATTT-TCGCTTTGACATTCTCGATCGTGTCTGAAGCTTCAAC 593 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCATT 18326 || | |||||| | || || ||||| ||||| ||||| || |||||| Sbjct 594 CTCCAATGTGATGGTCTTTCCCGTCAAGGTTTTGACAAAGATCTGCATT 642 >seq1483 Length=30179 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 18114 AGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCT 18173 ||||||| ||| | || |||||||| ||||| |||||||||| | || ||| |||| Sbjct 23264 AGTACCAAGTGCAAGGTAGATTCTTTCTGAATATTGTAGTCGGATAAAGTCCTACCATCT 23323 Query 18174 TCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211 |||||||| ||||| ||| |||| | |||||| ||||| Sbjct 23324 TCCAATTGCTTGCCAGCAAAGATCAATCTTTGCTGATC 23361 >seq12857 Length=4317 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCC 18158 || || ||||| | ||| || | || | |||||||| || ||||| ||||| || | Sbjct 4046 CCACCACGTAGACGAAGAACTAAATGTAAAGTTGATTCCTTCTGAATATTGTAATCAGAA 4105 Query 18159 ATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGC 18218 | || || |||||| | |||||| || ||| |||| | ||| || |||||| || Sbjct 4106 AGCGTGCGACCATCTTCGAGTTGTTTTCCTGCAAAGATCAATCTCTGCTGATCCGGAGGG 4165 Query 18219 ACGCCTTCCTTATCGGCAATTTGTTGC-TTGACCTGTGCAACAGTGTCACCGGGCTCGGT 18277 | ||||||||||| ||||| | || ||||| | | | || ||| | |||| Sbjct 4166 ATACCTTCCTTATCCTGAATTT-TGGCTTTGACATTCTCTATCGTATCAGATGCCTCGAC 4224 Query 18278 TTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | |||||| |||| ||||| | || || || ||||| ||||| Sbjct 4225 TTCCAATGTGATGGTTTTACCGGTGAGAGTCTTGACGAAAATCTGCAT 4272 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379173845722980