Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq2779 122 8e-23 seq1592 109 5e-19 seq12857 98.7 9e-16 seq532 95.1 1e-14 seq5929 91.5 1e-13 seq8564 84.2 2e-11 seq121 82.4 7e-11 >seq2779 Length=20704 Score = 122 bits (134), Expect = 8e-23 Identities = 154/212 (73%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || ||||||||||| ||||||||||| |||||| | || |||||| | || Sbjct 8603 ATGCAGATCTTTGTAAAGACTCTCACAGGCAAAACCATCACCCTTGAAGTTGAAGCTTCA 8544 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| || || | ||| |||||| || || | || || || ||| Sbjct 8543 GATACCATAGAAAATGTGAAGGCCAAAATCCAGGACAAAGAGGGAATTCCCCCGGATCAG 8484 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || |||||||||||||| | ||||| | ||| | |||||| || Sbjct 8483 CAGCGTCTGATTTTCGCTGGCAAACAACTTGAAGATGGCAGAACTCTTTCCGATTACAAT 8424 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| || ||||||||||| || Sbjct 8423 ATCCAGAAGGAATCCACGCTTCATCTGGTCCT 8392 Score = 114 bits (126), Expect = 1e-20 Identities = 153/213 (72%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 ||||||||| ||||| || ||||| || || ||||| |||||| | || || ||| | || Sbjct 8832 CATGCAAATCTTCGTGAAAACTCTCACTGGGAAAACCATCACCCTTGAGGTAGAAGCTTC 8773 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | | || | || ||| | || |||||||||||| | || || || || Sbjct 8772 TGACACTATAGAGAATGTTAAAGCCAAGATTCAAGACAAGGAAGGCATTCCACCTGATCA 8713 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || || |||||| ||||||| | ||| | |||||| || Sbjct 8712 GCAGCGCCTGATCTTTGCCGGAAAACAGCTGGAAGATGGCAGAACTCTTTCCGATTACAA 8653 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 || || || ||||| || ||||||||||| || Sbjct 8652 TATCCAGAAGGAATCCACACTTCATCTGGTCCT 8620 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || || || || ||||| ||||||||||| || || | || || ||| | || Sbjct 8375 ATGCAGATCTTTGTGAAAACTCTTACAGGCAAAACCATTACTCTTGAAGTCGAAGCTTCA 8316 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| |||| | || ||| | ||| |||||| ||||| | || ||||| ||| Sbjct 8315 GACACCATCGAGAACGTAAAAGCAAAAATCCAGGACAAAGAAGGAATTCCTCCCGATCAG 8256 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || ||||| || || || || || ||| ||||||| | ||| | ||||||||| Sbjct 8255 CAACGTCTCATTTTTGCCGGTAAGCAGCTGGAAGATGGCAGAACTCTTTCCGATTATAAT 8196 Query 31373 ATTCAAAAAGAATCGACTCTTCA 31395 |||||||| ||||| || ||||| Sbjct 8195 ATTCAAAAGGAATCTACACTTCA 8173 >seq1592 Length=29089 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| ||||| || ||||| | || || ||||| || || |||| |||||| | || Sbjct 870 CATGCAGATTTTTGTGAAGACATTAACTGGAAAAACTATAACTCTCGAAGTTGAAGCCTC 811 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 |||| | |||| | || || || || |||||| || || | || || ||||| Sbjct 810 TGACACTATCGAGAACGTAAAGGCGAAGATTCAGGACAAAGAGGGTATTCCACCTGACCA 751 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| | || ||||| || |||||| | |||||| || || |||||| || Sbjct 750 GCAGCGCTTGATTTTCGCCGGGAAACAGCTTGAAGACGGACGTACCTTGTCCGATTACAA 691 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| || ||||| ||||| |||||||| || ||| | | ||||| Sbjct 690 TATTCAGAAGGAATCCACTCTCCATCTGGTTCTCAGATTACGTGGCGG 643 Score = 89.7 bits (98), Expect = 5e-13 Identities = 142/204 (70%), Gaps = 0/204 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || || |||| || ||||| || || | || || || | || Sbjct 413 ATGCAAATTTTCGTCAAAACCTTGACGGGAAAAACTATTACTTTGGAAGTAGAGGCTTCA 354 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | |||||| | ||| ||||| |||||| | || || || ||| Sbjct 353 GATACGATCGAGAATGTCAAAGCCAAAATTCAAGACAAAGAAGGCATCCCTCCGGATCAG 294 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || ||||| ||||| ||| |||| ||| || || |||||| || Sbjct 293 CAGAGATTGATTTTCGCGGGCAAGCAGCTGGAGGACGGACGCACCTTGTCCGATTACAAT 234 Query 31373 ATTCAAAAAGAATCGACTCTTCAT 31396 |||||||| ||||| ||||| ||| Sbjct 233 ATTCAAAAGGAATCCACTCTGCAT 210 >seq12857 Length=4317 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| || ||| ||||||| ||||| ||||| | || || || | || Sbjct 3816 ATGCAAATTTTCGTCAAAACTTTGACAGGAAAAACTATCACTTTGGAGGTAGAGGCTTCG 3757 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | |||| | || || | ||| ||||| || ||| | || || || ||| Sbjct 3756 GATACGATCGAGAATGTAAAGGCTAAAATTCAAGACAAAGAGGGCATTCCTCCTGATCAG 3697 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || ||||| ||||| ||| | || ||| ||| || |||||||| Sbjct 3696 CAAAGACTGATTTTCGCGGGCAAGCAGCTCGAGGACGGACGTACTTTGTCAGATTATAAT 3637 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| |||||||| || || ||||| ||||| | || || ||||| Sbjct 3636 ATTCAGAAAGAATCTACACTACATCTTGTACTCCGTCTTAGAGGCGG 3590 >seq532 Length=46805 Score = 95.1 bits (104), Expect = 1e-14 Identities = 132/185 (71%), Gaps = 0/185 (0%) Strand=Plus/Plus Query 57915 AAGAAGGCAGAGTGGTCAATCAAATGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGG 57974 |||||||| | ||| || | || ||||| || || || || || || | ||| | Sbjct 28274 AAGAAGGCCAATTGGGCATTAAACTGGATCAATCACGACAGCGCTACATTTCCTGAGCGT 28333 Query 57975 CTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTT 58034 || | |||||||| || ||||||||||| ||||| ||||| || || |||| || Sbjct 28334 GTAGTTGCGTTCGCGGCGGTCGAAGGTATCTTCTTCAGTGGCAGTTTCGCTTCAATCTTC 28393 Query 58035 TGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGC 58094 ||| |||||||||| || | ||||| || || || || |||||||| | || || || Sbjct 28394 TGGCTGAAGAAACGAGGAGTCATGCCAGGTCTCACCTTCAGCAACGAACTCATCTCACGA 28453 Query 58095 GACGA 58099 ||||| Sbjct 28454 GACGA 28458 >seq5929 Length=11024 Score = 91.5 bits (100), Expect = 1e-13 Identities = 129/179 (72%), Gaps = 2/179 (1%) Strand=Plus/Minus Query 22689 CCGGGCTGCCTTCGTACGTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCT 22748 |||| || ||||| ||||||||||| ||| | | || || | ||||| ||||| | Sbjct 1069 CCGGACTACCTTCATACGTTTCGTAAACACCTTTTTCTGCAGCCAACTCGCAACTCGCTT 1010 Query 22749 CCAACGCGCCGTAATATATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGC 22808 |||| || || ||||| | ||||||||||||||| |||| | ||| || | || Sbjct 1009 CCAAGGCACCATAATAAAGAGTCTCGAAGATTTTGATGTTGAGTTCCTTCGCCTCTTTGC 950 Query 22809 TTTCGTACGGCATA-CGCATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACC 22866 ||||| |||| ||| ||||| | || ||| || ||||| | ||| || | || ||||| Sbjct 949 TTTCGAACGG-ATATCGCATTAACAGGAAGGCATCCGCTAAACCTTGTATTCCGATACC 892 Score = 86.0 bits (94), Expect = 6e-12 Identities = 99/131 (76%), Gaps = 2/131 (2%) Strand=Plus/Minus Query 23258 TACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCAT-CGGACA 23316 |||| | | | |||||| |||| || || |||| ||| || |||| ||| |||||| Sbjct 293 TACAGCTCTTTAAATTCATCACCCCAAACATCAGCCAAGCCAGGGGATT-CATACGGACA 235 Query 23317 CATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAG 23376 ||| | ||||| ||| |||||| | || ||| |||||||||||| ||||||||||| Sbjct 234 CATCAAGCTCCAGATTTCGTCATTATATACACGTTCCATAAAAAGATCTGGTATCCATAG 175 Query 23377 AGCGTAGAACA 23387 | | ||||||| Sbjct 174 ACCATAGAACA 164 >seq8564 Length=7362 Score = 84.2 bits (92), Expect = 2e-11 Identities = 94/126 (75%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 23418 TGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGG 23477 ||||| | || | || |||||||| || | || |||||||| ||||| | |||| | Sbjct 7314 TGTTCCTCTTAAGCTCTAAAAAGTCAAAGATATCGGCATGCCATGGCTCTAAATAAATAG 7255 Query 23478 CAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACA 23537 ||||||| || ||||||||||| || || ||||| || ||| ||| ||| ||||||| Sbjct 7254 CAAACGCTCCTGGTCTCTTATTTCCACCTTGATCAACATAAATAGCCATGTCATTGTACA 7195 Query 23538 CTCTTA 23543 | ||| Sbjct 7194 ATTTTA 7189 >seq121 Length=74473 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| |||||||| || || || || || ||||| || || |||| || ||| | || Sbjct 8311 CATGCAGATTTTCGTCAAAACCCTCACTGGTAAAACCATTACTCTCGAGGTAGAAGCCTC 8252 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 || | |||||| || ||| | || ||| || || || | || || || || Sbjct 8251 TGATACCATCGAAAATGTGAAAGCCAAGATTCAGGATAAAGAGGGAATTCCACCAGATCA 8192 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTATA 31370 |||||| || || || ||||| |||||| ||||||| | | | ||| | ||||||| Sbjct 8191 GCAGCGACTTATCTTTGCTGGAAAACAGCTGGAAGA-TGGACGTACTCTCTCTGATTATA 8133 Query 31371 ACATTCAAAAAG 31382 |||| ||||||| Sbjct 8132 ACATCCAAAAAG 8121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445561325167680