Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_003309.1 Length=53373 Score E Sequences producing significant alignments: (Bits) Value seq19229 140 1e-28 >seq19229 Length=2166 Score = 140 bits (154), Expect = 1e-28 Identities = 352/524 (67%), Gaps = 26/524 (5%) Strand=Plus/Plus Query 33405 TCAGCTTCAGCGGGCGGGATATAGCCGAGCGGTTCCATCAGCCGATGATGGTTGTACCAG 33464 || ||||| | ||||| || | || ||| |||||| | || ||| |||| ||||| Sbjct 507 TCGGCTTCTACCGGCGGTATGTGTCCTAGCCGTTCCAGTAACCTTCGATTGTTGAACCAG 566 Query 33465 GCGACCCATTCCAGCGTTGCCAGTTCGACGGATTCCC--TCGTTTTCCAAGGGGCGCGCC 33522 | ||||| |||| || || || || || |||| | ||||| | || | Sbjct 567 TCCACCCACGCCAGTGTCGCAAGCTCCAC---TTCCGCGTGGTTTTTCCAGCTTTTA--C 621 Query 33523 GATGAATCAGTTCCGTCTTGTACAGGCCGTTGATCGTTTCGGCCAGCGCATTGTCGTAGC 33582 | || |||| ||||| ||||| ||||| ||||| | |||||||| ||||| ||||| Sbjct 622 GGTGGATCACTTCCGCTTTGTAAAGGCCATTGATACTCTCGGCCAGGGCATTATCGTAAG 681 Query 33583 TGTCGCCCCGGCTGCCGACTGAGGGCTCGATGCCGGCCTCAGCCAGCCGTTCGCTGTA-G 33641 |||||| |||||| || | | | | | ||| || ||| | | |||| | Sbjct 682 AGTCGCCTGTGCTGCCTGTCGACGCCAACAGCTCCGACTCCTGCAACCGCTGGGTGTACG 741 Query 33642 CGAATGCTGACGTATTGAGACCCCCTGTCGGAATGATGAATCAAAGTCCCGTCCTCGCCC 33701 | | || |||||||| || ||| |||| || ||||| || | || || Sbjct 742 CCAGTGAC-ACGTATTGGGAGCCCTTGTCCGAGTGATGGATTGTA--CCTGTG------- 791 Query 33702 GGTTGGCGGGCGTACAGCGCTTGTTCAAGTGCATCCAGAACAAAGTCCGTGGT--CATCG 33759 || | || | |||| |||||||| || |||||||| || || || || | ||||| Sbjct 792 GGACGACGAGACCACAGAGCTTGTTCTAGCGCATCCAGCACGAA--CCTTGCTTACATCG 849 Query 33760 ACGAGCTGACCCGCCAGCCAACAATACGGCGGGCGAACACGTCGATCACGAATGCCACGT 33819 |||| ||||| ||||||||| || | ||||||||| ||||| | ||| ||||| | Sbjct 850 ACGATGAGACCCTCCAGCCAACGATCGTGTTGGCGAACACATCGATGATGAACGCCACAT 909 Query 33820 ACAGCCAGCCTTGCCATGTCGAGACATACGTAAAATCCG-ACACCCAGAGCTGATTCGGT 33878 || || | |||| || ||| ||||||||||| | ||| ||| |||||||| || Sbjct 910 ACGCGAAGGCCTGCCGGGTGCTGACGTACGTAAAATCTGCACA-CCAAAGCTGATTGGGA 968 Query 33879 CGGTCAGCCTTGAACTGCCGGTTGACTCGGTC--CAGCGGGCGC 33920 || || ||| |||||| ||||| || | || |||||| ||| Sbjct 969 CGTTCTGCCACGAACTGACGGTTTACCAGATCCGCAGCGGTCGC 1012 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 170597408229080