Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Lasius_20niger_20[genbank_20GCA_5F001045655.1_202015-07-02] 36,804 sequences; 236,236,391 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq532 105 8e-18 seq5929 102 1e-16 seq2380 95.1 2e-14 seq2146 82.4 1e-10 >seq532 Length=46805 Score = 105 bits (116), Expect = 8e-18 Identities = 139/191 (73%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 33848 AACATAAGTATCGATCA--AAAGACTATACATTTCCGAATGAATGTTTTCAATGGCCATC 33905 || |||||| ||||| | || || |||||| || |||||||| ||||| ||||| ||| Sbjct 27927 AATATAAGTTTCGATGAGTAAGGA--ATACATCTCAGAATGAATATTTTCTATGGCGATC 27870 Query 33906 TGAAATCCGTAGAAACATCTAGCCTCGGTAATCTGCACTTCTGTACAAAATCGTTCTGCT 33965 || || ||||||||||| | || || | || | ||| ||| || |||| || Sbjct 27869 TGGAAGCCGTAGAAACAACGTGCTTCCGCGATTTTCACCTCTTGACTGAATCTCTCAATC 27810 Query 33966 AAATTTTCATTCACTATTCCATCACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAA 34025 | ||| ||||| || |||||||| || ||||| |||||||| ||||| ||||| Sbjct 27809 AGATTCTCATTAACGATTCCATCGGAAGCAGCAAAGAACGCCAAGACATGAGAGATAAAG 27750 Query 34026 TATTTTTCGTC 34036 ||| ||||||| Sbjct 27749 TATCTTTCGTC 27739 Score = 86.0 bits (94), Expect = 8e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Minus Query 34080 ACTTCTTCCACTGTCCAAAATGATGCCTCTGCCTTTTTATACATATTCCAGATGTCATGA 34139 ||||| || | ||||||||||| ||| | |||||||| ||||| | ||||| ||| || Sbjct 27589 ACTTCCTCTATGGTCCAAAATGACGCCACAGCCTTTTTGTACATGTCCCAGACATCAGGA 27530 Query 34140 TATTGGATTGGGAAAATAACAAATCTATTTGG 34171 ||||| || |||||||| ||||| | |||||| Sbjct 27529 TATTGAATGGGGAAAATTACAAAGCGATTTGG 27498 >seq5929 Length=11024 Score = 102 bits (112), Expect = 1e-16 Identities = 217/318 (68%), Gaps = 12/318 (4%) Strand=Plus/Minus Query 62789 ACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAAT 62848 ||| |||||||||||||| | |||||| ||| | || ||| |||||| |||| | Sbjct 813 ACCAATAGGTCTATGTCTTTGATTAGAAGTTTTCGTCTCCAAAATGGGATAAAAATTGAC 754 Query 62849 ATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTTCAGTTTGAG 62905 || |||| ||||| | ||| | |||| ||| |||| | || || ||||| Sbjct 753 GTCGATAACTTTATCCAAATTACGAGTGACGATT--TTTG-CAACTGTTTTAAGTTTATC 697 Query 62906 AAAATCAAA----TCGCCCATC-TATT-ACAAACATGTTCAATGCAACAGATGCCAGATT 62959 |||||| || | | || |||| |||||||| || | |||| |||||||||||| Sbjct 696 AAAATCGAAAGTCTTGTTATTCGTATTCACAAACATATTGACAGCAATAGATGCCAGATT 637 Query 62960 ACACACGGCTACCTCATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACA 63019 |||||| || || || || | | ||||| || | || ||||| | ||| || || Sbjct 636 ACACACAGCAACTTCCCCAGGGCCAGAGTATTGAATAACTTCGGTGCACAAATTGCTGCA 577 Query 63020 CTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAAT 63079 ||||| || || | | || |||||| ||| || || |||||| ||||| || Sbjct 576 TTTGATTGTACCAATGTGCTGATGATTAGATTTTCGATTGCAGTGATCCTTGTAAAGCAT 517 Query 63080 GAATGGAGTACCAGTTTC 63097 | | ||||| |||||||| Sbjct 516 GTAAGGAGTTCCAGTTTC 499 >seq2380 Length=22946 Score = 95.1 bits (104), Expect = 2e-14 Identities = 105/140 (75%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 64006 CACTAAATAGtttttttGTTTCCTTGTGTAGATTTGATATGGCTATTCTGGCGGCTAGAA 64065 ||||||| | || |||||||| || || ||||| |||||||| ||||| || |||| | Sbjct 21293 CACTAAAAATCTTCTTTGTTTCTTTATGCAGATTAGATATGGCAATTCTAGCTGCTAAAG 21234 Query 64066 TGGCATAATCCGGATGTTGTGTAGTACAAGTGGCTGCTATTTCGGCTGCCAGAGTGTCCA 64125 | || ||||| | |||||| | | | | ||||| ||||| || || | |||||| Sbjct 21233 TTGCGTAATCTGCATGTTGATTGATCATACTTGCTGCAATTTCAGCCGCTAAGTTGTCCA 21174 Query 64126 ATTCTACCGTTGTTACTCCA 64145 |||| || |||||||||||| Sbjct 21173 ATTCAACTGTTGTTACTCCA 21154 >seq2146 Length=24533 Score = 82.4 bits (90), Expect = 1e-10 Identities = 120/170 (71%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 62622 CCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCA 62681 ||| |||||| ||||| || |||| || ||||| || ||||| || |||| ||| Sbjct 24271 CCTTCATATGACTCATAAGGACCTTTCTCGGTAGCTATTTCGCAACTGGCTTCTAGAGCA 24330 Query 62682 CCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATCTTGTGCTTCCGGGCTATCAAAT 62741 || ||||||| || ||||| || | |||| || || ||||| ||| |||||| Sbjct 24331 CCATAATAAAGAGTCTCAAAAATTTGAATATTGAGTTCACTAGCTTCTTTGCTTTCAAAT 24390 Query 62742 GGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTGAACACCAATACC 62791 || || | | | ||||| || || ||||||||||| |||| ||||| Sbjct 24391 GGGTATCTCATTAAGATAAATGCATCTGCTAATCCTTGTACACTGATACC 24440 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629527852413120